Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3134

Experiment: Gentamicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3133 and Ga0059261_3134 are separated by 358 nucleotidesGa0059261_3134 and Ga0059261_3135 are separated by 122 nucleotides Ga0059261_3133: Ga0059261_3133 - UTP--glucose-1-phosphate uridylyltransferase, at 3,275,433 to 3,276,311 _3133 Ga0059261_3134: Ga0059261_3134 - hypothetical protein, at 3,276,670 to 3,277,086 _3134 Ga0059261_3135: Ga0059261_3135 - hypothetical protein, at 3,277,209 to 3,277,994 _3135 Position (kb) 3276 3277 3278Strain fitness (log2 ratio) -1 0 1at 3276.309 kb on + strandat 3276.330 kb on - strandat 3276.330 kb on - strandat 3276.368 kb on - strandat 3276.371 kb on + strandat 3276.372 kb on - strandat 3276.405 kb on + strandat 3276.405 kb on + strandat 3276.406 kb on - strandat 3276.406 kb on - strandat 3276.422 kb on + strandat 3276.423 kb on - strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.429 kb on + strandat 3276.671 kb on + strandat 3276.671 kb on + strandat 3276.671 kb on + strandat 3276.672 kb on - strandat 3276.672 kb on - strandat 3276.680 kb on + strandat 3276.732 kb on + strand, within Ga0059261_3134at 3276.733 kb on - strand, within Ga0059261_3134at 3276.733 kb on - strand, within Ga0059261_3134at 3276.758 kb on + strand, within Ga0059261_3134at 3276.758 kb on + strand, within Ga0059261_3134at 3276.758 kb on + strand, within Ga0059261_3134at 3276.758 kb on + strand, within Ga0059261_3134at 3276.758 kb on + strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.759 kb on - strand, within Ga0059261_3134at 3276.842 kb on + strand, within Ga0059261_3134at 3276.842 kb on + strand, within Ga0059261_3134at 3276.843 kb on - strand, within Ga0059261_3134at 3276.926 kb on + strand, within Ga0059261_3134at 3276.926 kb on + strand, within Ga0059261_3134at 3276.926 kb on + strand, within Ga0059261_3134at 3276.926 kb on + strand, within Ga0059261_3134at 3276.927 kb on - strand, within Ga0059261_3134at 3276.927 kb on - strand, within Ga0059261_3134at 3277.056 kb on + strandat 3277.057 kb on - strandat 3277.057 kb on - strandat 3277.057 kb on - strandat 3277.115 kb on + strandat 3277.966 kb on + strandat 3277.966 kb on + strandat 3277.978 kb on + strandat 3277.979 kb on - strandat 3277.992 kb on + strandat 3277.992 kb on + strandat 3277.992 kb on + strandat 3277.992 kb on + strandat 3278.007 kb on + strandat 3278.007 kb on + strandat 3278.007 kb on + strandat 3278.019 kb on + strandat 3278.019 kb on + strandat 3278.019 kb on + strandat 3278.019 kb on + strandat 3278.020 kb on - strandat 3278.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml
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3,276,309 + +0.8
3,276,330 - -0.1
3,276,330 - -0.0
3,276,368 - +0.2
3,276,371 + -0.1
3,276,372 - +0.0
3,276,405 + +0.0
3,276,405 + +0.8
3,276,406 - +0.2
3,276,406 - -1.1
3,276,422 + +0.4
3,276,423 - -0.5
3,276,429 + -0.7
3,276,429 + +1.4
3,276,429 + -0.4
3,276,429 + -1.1
3,276,429 + +0.4
3,276,671 + -0.8
3,276,671 + -0.2
3,276,671 + -0.8
3,276,672 - +0.5
3,276,672 - -0.2
3,276,680 + -0.3
3,276,732 + Ga0059261_3134 0.15 -0.3
3,276,733 - Ga0059261_3134 0.15 +0.5
3,276,733 - Ga0059261_3134 0.15 -0.5
3,276,758 + Ga0059261_3134 0.21 +1.2
3,276,758 + Ga0059261_3134 0.21 -0.5
3,276,758 + Ga0059261_3134 0.21 +0.3
3,276,758 + Ga0059261_3134 0.21 +0.0
3,276,758 + Ga0059261_3134 0.21 +0.3
3,276,759 - Ga0059261_3134 0.21 -0.5
3,276,759 - Ga0059261_3134 0.21 -1.0
3,276,759 - Ga0059261_3134 0.21 +0.8
3,276,759 - Ga0059261_3134 0.21 +0.4
3,276,759 - Ga0059261_3134 0.21 +0.8
3,276,759 - Ga0059261_3134 0.21 +0.3
3,276,759 - Ga0059261_3134 0.21 +0.2
3,276,759 - Ga0059261_3134 0.21 +1.2
3,276,759 - Ga0059261_3134 0.21 +0.3
3,276,759 - Ga0059261_3134 0.21 +0.6
3,276,759 - Ga0059261_3134 0.21 -0.1
3,276,842 + Ga0059261_3134 0.41 -0.2
3,276,842 + Ga0059261_3134 0.41 +0.6
3,276,843 - Ga0059261_3134 0.41 +1.6
3,276,926 + Ga0059261_3134 0.61 +0.4
3,276,926 + Ga0059261_3134 0.61 +0.4
3,276,926 + Ga0059261_3134 0.61 +0.4
3,276,926 + Ga0059261_3134 0.61 -0.3
3,276,927 - Ga0059261_3134 0.62 +0.6
3,276,927 - Ga0059261_3134 0.62 -0.7
3,277,056 + -0.5
3,277,057 - -0.3
3,277,057 - +0.9
3,277,057 - +0.1
3,277,115 + +0.1
3,277,966 + +0.5
3,277,966 + -0.5
3,277,978 + +1.5
3,277,979 - -0.2
3,277,992 + +0.5
3,277,992 + +0.2
3,277,992 + -0.3
3,277,992 + +0.8
3,278,007 + +0.8
3,278,007 + -0.0
3,278,007 + +0.7
3,278,019 + +0.5
3,278,019 + +0.1
3,278,019 + -0.2
3,278,019 + +1.2
3,278,020 - -0.4
3,278,020 - -1.1

Or see this region's nucleotide sequence