Experiment: Gentamicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3133 and Ga0059261_3134 are separated by 358 nucleotides Ga0059261_3134 and Ga0059261_3135 are separated by 122 nucleotides
Ga0059261_3133: Ga0059261_3133 - UTP--glucose-1-phosphate uridylyltransferase, at 3,275,433 to 3,276,311
_3133
Ga0059261_3134: Ga0059261_3134 - hypothetical protein, at 3,276,670 to 3,277,086
_3134
Ga0059261_3135: Ga0059261_3135 - hypothetical protein, at 3,277,209 to 3,277,994
_3135
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-1
0
1 at 3276.309 kb on + strand at 3276.330 kb on - strand at 3276.330 kb on - strand at 3276.368 kb on - strand at 3276.371 kb on + strand at 3276.372 kb on - strand at 3276.405 kb on + strand at 3276.405 kb on + strand at 3276.406 kb on - strand at 3276.406 kb on - strand at 3276.422 kb on + strand at 3276.423 kb on - strand at 3276.429 kb on + strand at 3276.429 kb on + strand at 3276.429 kb on + strand at 3276.429 kb on + strand at 3276.429 kb on + strand at 3276.671 kb on + strand at 3276.671 kb on + strand at 3276.671 kb on + strand at 3276.672 kb on - strand at 3276.672 kb on - strand at 3276.680 kb on + strand at 3276.732 kb on + strand, within Ga0059261_3134 at 3276.733 kb on - strand, within Ga0059261_3134 at 3276.733 kb on - strand, within Ga0059261_3134 at 3276.758 kb on + strand, within Ga0059261_3134 at 3276.758 kb on + strand, within Ga0059261_3134 at 3276.758 kb on + strand, within Ga0059261_3134 at 3276.758 kb on + strand, within Ga0059261_3134 at 3276.758 kb on + strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.759 kb on - strand, within Ga0059261_3134 at 3276.842 kb on + strand, within Ga0059261_3134 at 3276.842 kb on + strand, within Ga0059261_3134 at 3276.843 kb on - strand, within Ga0059261_3134 at 3276.926 kb on + strand, within Ga0059261_3134 at 3276.926 kb on + strand, within Ga0059261_3134 at 3276.926 kb on + strand, within Ga0059261_3134 at 3276.926 kb on + strand, within Ga0059261_3134 at 3276.927 kb on - strand, within Ga0059261_3134 at 3276.927 kb on - strand, within Ga0059261_3134 at 3277.056 kb on + strand at 3277.057 kb on - strand at 3277.057 kb on - strand at 3277.057 kb on - strand at 3277.115 kb on + strand at 3277.966 kb on + strand at 3277.966 kb on + strand at 3277.978 kb on + strand at 3277.979 kb on - strand at 3277.992 kb on + strand at 3277.992 kb on + strand at 3277.992 kb on + strand at 3277.992 kb on + strand at 3278.007 kb on + strand at 3278.007 kb on + strand at 3278.007 kb on + strand at 3278.019 kb on + strand at 3278.019 kb on + strand at 3278.019 kb on + strand at 3278.019 kb on + strand at 3278.020 kb on - strand at 3278.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml remove 3,276,309 + +0.8 3,276,330 - -0.1 3,276,330 - -0.0 3,276,368 - +0.2 3,276,371 + -0.1 3,276,372 - +0.0 3,276,405 + +0.0 3,276,405 + +0.8 3,276,406 - +0.2 3,276,406 - -1.1 3,276,422 + +0.4 3,276,423 - -0.5 3,276,429 + -0.7 3,276,429 + +1.4 3,276,429 + -0.4 3,276,429 + -1.1 3,276,429 + +0.4 3,276,671 + -0.8 3,276,671 + -0.2 3,276,671 + -0.8 3,276,672 - +0.5 3,276,672 - -0.2 3,276,680 + -0.3 3,276,732 + Ga0059261_3134 0.15 -0.3 3,276,733 - Ga0059261_3134 0.15 +0.5 3,276,733 - Ga0059261_3134 0.15 -0.5 3,276,758 + Ga0059261_3134 0.21 +1.2 3,276,758 + Ga0059261_3134 0.21 -0.5 3,276,758 + Ga0059261_3134 0.21 +0.3 3,276,758 + Ga0059261_3134 0.21 +0.0 3,276,758 + Ga0059261_3134 0.21 +0.3 3,276,759 - Ga0059261_3134 0.21 -0.5 3,276,759 - Ga0059261_3134 0.21 -1.0 3,276,759 - Ga0059261_3134 0.21 +0.8 3,276,759 - Ga0059261_3134 0.21 +0.4 3,276,759 - Ga0059261_3134 0.21 +0.8 3,276,759 - Ga0059261_3134 0.21 +0.3 3,276,759 - Ga0059261_3134 0.21 +0.2 3,276,759 - Ga0059261_3134 0.21 +1.2 3,276,759 - Ga0059261_3134 0.21 +0.3 3,276,759 - Ga0059261_3134 0.21 +0.6 3,276,759 - Ga0059261_3134 0.21 -0.1 3,276,842 + Ga0059261_3134 0.41 -0.2 3,276,842 + Ga0059261_3134 0.41 +0.6 3,276,843 - Ga0059261_3134 0.41 +1.6 3,276,926 + Ga0059261_3134 0.61 +0.4 3,276,926 + Ga0059261_3134 0.61 +0.4 3,276,926 + Ga0059261_3134 0.61 +0.4 3,276,926 + Ga0059261_3134 0.61 -0.3 3,276,927 - Ga0059261_3134 0.62 +0.6 3,276,927 - Ga0059261_3134 0.62 -0.7 3,277,056 + -0.5 3,277,057 - -0.3 3,277,057 - +0.9 3,277,057 - +0.1 3,277,115 + +0.1 3,277,966 + +0.5 3,277,966 + -0.5 3,277,978 + +1.5 3,277,979 - -0.2 3,277,992 + +0.5 3,277,992 + +0.2 3,277,992 + -0.3 3,277,992 + +0.8 3,278,007 + +0.8 3,278,007 + -0.0 3,278,007 + +0.7 3,278,019 + +0.5 3,278,019 + +0.1 3,278,019 + -0.2 3,278,019 + +1.2 3,278,020 - -0.4 3,278,020 - -1.1
Or see this region's nucleotide sequence