Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1527

Experiment: Gentamicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1525 and Ga0059261_1526 are separated by 106 nucleotidesGa0059261_1526 and Ga0059261_1527 are separated by 20 nucleotidesGa0059261_1527 and Ga0059261_1528 are separated by 201 nucleotidesGa0059261_1528 and Ga0059261_1529 overlap by 4 nucleotides Ga0059261_1525: Ga0059261_1525 - Domain of unknown function (DUF4349), at 1,605,109 to 1,605,918 _1525 Ga0059261_1526: Ga0059261_1526 - phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 1,606,025 to 1,606,807 _1526 Ga0059261_1527: Ga0059261_1527 - hypothetical protein, at 1,606,828 to 1,606,977 _1527 Ga0059261_1528: Ga0059261_1528 - phosphoribosylformylglycinamidine synthase, purS protein, at 1,607,179 to 1,607,424 _1528 Ga0059261_1529: Ga0059261_1529 - phosphoribosylformylglycinamidine synthase I, at 1,607,421 to 1,608,086 _1529 Position (kb) 1606 1607Strain fitness (log2 ratio) -1 0 1at 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.805 kb on + strandat 1606.806 kb on - strandat 1606.806 kb on - strandat 1606.806 kb on - strandat 1606.806 kb on - strandat 1606.806 kb on - strandat 1606.896 kb on + strand, within Ga0059261_1527at 1606.896 kb on + strand, within Ga0059261_1527at 1606.897 kb on - strand, within Ga0059261_1527at 1606.897 kb on - strand, within Ga0059261_1527at 1606.980 kb on + strandat 1606.980 kb on + strandat 1606.980 kb on + strandat 1606.980 kb on + strandat 1606.981 kb on - strandat 1606.981 kb on - strandat 1607.052 kb on - strandat 1607.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml
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1,606,805 + +0.1
1,606,805 + +1.5
1,606,805 + +0.4
1,606,805 + +0.7
1,606,805 + +0.1
1,606,805 + +0.2
1,606,805 + +0.6
1,606,806 - +0.2
1,606,806 - -0.2
1,606,806 - +0.4
1,606,806 - -0.3
1,606,806 - +0.1
1,606,896 + Ga0059261_1527 0.45 +0.8
1,606,896 + Ga0059261_1527 0.45 +0.6
1,606,897 - Ga0059261_1527 0.46 +0.1
1,606,897 - Ga0059261_1527 0.46 +1.0
1,606,980 + -0.4
1,606,980 + +0.7
1,606,980 + -1.0
1,606,980 + -0.1
1,606,981 - +0.1
1,606,981 - +0.1
1,607,052 - +0.1
1,607,147 + -1.2

Or see this region's nucleotide sequence