Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0829

Experiment: Gentamicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0828 and Ga0059261_0829 are separated by 117 nucleotidesGa0059261_0829 and Ga0059261_0830 are separated by 13 nucleotidesGa0059261_0830 and Ga0059261_0831 are separated by 52 nucleotidesGa0059261_0831 and Ga0059261_0832 are separated by 44 nucleotides Ga0059261_0828: Ga0059261_0828 - Peptidase family S41, at 867,221 to 868,315 _0828 Ga0059261_0829: Ga0059261_0829 - Transcriptional regulators, at 868,433 to 868,921 _0829 Ga0059261_0830: Ga0059261_0830 - Predicted membrane protein, at 868,935 to 869,372 _0830 Ga0059261_0831: Ga0059261_0831 - tRNA, at 869,425 to 869,501 _0831 Ga0059261_0832: Ga0059261_0832 - Predicted permease, at 869,546 to 870,799 _0832 Position (kb) 868 869Strain fitness (log2 ratio) -2 -1 0 1 2at 867.561 kb on + strand, within Ga0059261_0828at 867.561 kb on + strandat 867.562 kb on - strand, within Ga0059261_0828at 867.562 kb on - strand, within Ga0059261_0828at 867.562 kb on - strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.564 kb on + strand, within Ga0059261_0828at 867.565 kb on - strand, within Ga0059261_0828at 867.565 kb on - strand, within Ga0059261_0828at 867.873 kb on + strand, within Ga0059261_0828at 867.873 kb on + strand, within Ga0059261_0828at 867.873 kb on + strand, within Ga0059261_0828at 867.874 kb on - strand, within Ga0059261_0828at 867.950 kb on + strand, within Ga0059261_0828at 867.951 kb on - strand, within Ga0059261_0828at 868.093 kb on - strand, within Ga0059261_0828at 868.093 kb on - strand, within Ga0059261_0828at 868.132 kb on - strand, within Ga0059261_0828at 868.132 kb on - strand, within Ga0059261_0828at 868.132 kb on - strand, within Ga0059261_0828at 868.218 kb on + strandat 868.218 kb on + strandat 868.218 kb on + strandat 868.218 kb on + strandat 868.218 kb on + strandat 868.218 kb on + strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.219 kb on - strandat 868.286 kb on + strandat 868.287 kb on - strandat 868.287 kb on - strandat 868.287 kb on - strandat 868.309 kb on + strandat 868.309 kb on + strandat 868.309 kb on + strandat 868.309 kb on + strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.310 kb on - strandat 868.338 kb on + strandat 868.338 kb on + strandat 868.338 kb on + strandat 868.351 kb on - strandat 868.390 kb on + strandat 868.391 kb on - strandat 868.641 kb on + strand, within Ga0059261_0829at 868.641 kb on + strand, within Ga0059261_0829at 868.641 kb on + strand, within Ga0059261_0829at 868.642 kb on - strand, within Ga0059261_0829at 868.790 kb on + strand, within Ga0059261_0829at 868.790 kb on + strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.791 kb on - strand, within Ga0059261_0829at 868.792 kb on + strand, within Ga0059261_0829at 868.793 kb on - strand, within Ga0059261_0829at 868.793 kb on - strand, within Ga0059261_0829at 868.833 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strand, within Ga0059261_0829at 868.841 kb on + strandat 868.842 kb on - strand, within Ga0059261_0829at 868.842 kb on - strand, within Ga0059261_0829at 868.843 kb on - strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.866 kb on + strand, within Ga0059261_0829at 868.867 kb on - strand, within Ga0059261_0829at 868.919 kb on + strandat 868.919 kb on + strandat 868.920 kb on - strandat 868.920 kb on - strandat 868.920 kb on - strandat 869.021 kb on - strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.037 kb on + strand, within Ga0059261_0830at 869.038 kb on - strand, within Ga0059261_0830at 869.038 kb on - strand, within Ga0059261_0830at 869.054 kb on + strand, within Ga0059261_0830at 869.054 kb on + strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.055 kb on - strand, within Ga0059261_0830at 869.072 kb on + strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.073 kb on - strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.145 kb on + strand, within Ga0059261_0830at 869.146 kb on - strand, within Ga0059261_0830at 869.607 kb on - strandat 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strandat 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.892 kb on + strand, within Ga0059261_0832at 869.893 kb on - strandat 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832at 869.893 kb on - strand, within Ga0059261_0832

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml
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867,561 + Ga0059261_0828 0.31 -0.1
867,561 + +2.7
867,562 - Ga0059261_0828 0.31 +0.5
867,562 - Ga0059261_0828 0.31 +1.0
867,562 - Ga0059261_0828 0.31 +0.4
867,564 + Ga0059261_0828 0.31 -0.7
867,564 + Ga0059261_0828 0.31 -1.0
867,564 + Ga0059261_0828 0.31 +0.6
867,564 + Ga0059261_0828 0.31 +0.5
867,564 + Ga0059261_0828 0.31 -0.0
867,564 + Ga0059261_0828 0.31 +0.1
867,564 + Ga0059261_0828 0.31 +0.7
867,564 + Ga0059261_0828 0.31 -0.3
867,564 + Ga0059261_0828 0.31 -0.3
867,564 + Ga0059261_0828 0.31 +0.1
867,564 + Ga0059261_0828 0.31 +0.4
867,565 - Ga0059261_0828 0.31 -0.3
867,565 - Ga0059261_0828 0.31 +1.2
867,873 + Ga0059261_0828 0.60 +0.1
867,873 + Ga0059261_0828 0.60 +0.3
867,873 + Ga0059261_0828 0.60 +0.7
867,874 - Ga0059261_0828 0.60 -0.6
867,950 + Ga0059261_0828 0.67 +0.1
867,951 - Ga0059261_0828 0.67 +0.7
868,093 - Ga0059261_0828 0.80 -0.4
868,093 - Ga0059261_0828 0.80 -0.5
868,132 - Ga0059261_0828 0.83 -0.2
868,132 - Ga0059261_0828 0.83 -0.6
868,132 - Ga0059261_0828 0.83 -0.1
868,218 + -1.0
868,218 + +1.6
868,218 + +0.9
868,218 + -2.1
868,218 + +0.0
868,218 + +0.1
868,219 - +0.1
868,219 - +0.2
868,219 - -0.1
868,219 - +0.5
868,219 - -0.1
868,219 - +0.1
868,219 - +0.7
868,286 + -0.3
868,287 - +2.7
868,287 - -0.9
868,287 - -0.0
868,309 + +0.3
868,309 + -0.8
868,309 + +0.7
868,309 + +0.7
868,310 - +0.4
868,310 - -0.6
868,310 - +0.7
868,310 - -0.1
868,310 - +0.3
868,310 - -0.1
868,310 - +0.4
868,310 - -1.5
868,310 - +0.2
868,310 - -0.2
868,338 + +0.8
868,338 + -0.1
868,338 + +0.4
868,351 - +0.4
868,390 + -0.3
868,391 - +0.0
868,641 + Ga0059261_0829 0.43 +0.1
868,641 + Ga0059261_0829 0.43 +0.7
868,641 + Ga0059261_0829 0.43 -0.2
868,642 - Ga0059261_0829 0.43 -0.2
868,790 + Ga0059261_0829 0.73 -0.1
868,790 + Ga0059261_0829 0.73 -1.1
868,791 - Ga0059261_0829 0.73 +0.2
868,791 - Ga0059261_0829 0.73 +0.2
868,791 - Ga0059261_0829 0.73 +0.1
868,791 - Ga0059261_0829 0.73 +0.0
868,791 - Ga0059261_0829 0.73 +0.5
868,792 + Ga0059261_0829 0.73 +0.3
868,793 - Ga0059261_0829 0.74 +0.1
868,793 - Ga0059261_0829 0.74 +1.0
868,833 + Ga0059261_0829 0.82 +0.2
868,841 + Ga0059261_0829 0.83 +0.7
868,841 + Ga0059261_0829 0.83 -0.7
868,841 + Ga0059261_0829 0.83 -0.3
868,841 + +0.7
868,842 - Ga0059261_0829 0.84 +0.5
868,842 - Ga0059261_0829 0.84 -0.2
868,843 - Ga0059261_0829 0.84 +0.2
868,866 + Ga0059261_0829 0.89 +0.3
868,866 + Ga0059261_0829 0.89 +0.7
868,866 + Ga0059261_0829 0.89 +1.4
868,866 + Ga0059261_0829 0.89 +0.5
868,867 - Ga0059261_0829 0.89 -0.8
868,919 + -0.1
868,919 + +0.1
868,920 - -1.3
868,920 - -0.1
868,920 - +1.2
869,021 - Ga0059261_0830 0.20 +0.1
869,037 + Ga0059261_0830 0.23 -0.1
869,037 + Ga0059261_0830 0.23 -1.4
869,037 + Ga0059261_0830 0.23 -1.0
869,037 + Ga0059261_0830 0.23 -0.9
869,038 - Ga0059261_0830 0.24 +0.2
869,038 - Ga0059261_0830 0.24 +0.2
869,054 + Ga0059261_0830 0.27 -0.5
869,054 + Ga0059261_0830 0.27 -0.4
869,055 - Ga0059261_0830 0.27 -0.1
869,055 - Ga0059261_0830 0.27 +0.7
869,055 - Ga0059261_0830 0.27 +0.8
869,072 + Ga0059261_0830 0.31 -0.2
869,073 - Ga0059261_0830 0.32 +0.9
869,073 - Ga0059261_0830 0.32 +0.6
869,073 - Ga0059261_0830 0.32 +0.6
869,073 - Ga0059261_0830 0.32 +0.2
869,145 + Ga0059261_0830 0.48 -0.4
869,145 + Ga0059261_0830 0.48 -1.5
869,145 + Ga0059261_0830 0.48 -1.1
869,145 + Ga0059261_0830 0.48 -0.3
869,146 - Ga0059261_0830 0.48 -0.1
869,607 - -0.3
869,892 + Ga0059261_0832 0.28 -0.1
869,892 + Ga0059261_0832 0.28 -1.1
869,892 + +0.7
869,892 + Ga0059261_0832 0.28 +0.2
869,892 + Ga0059261_0832 0.28 -0.2
869,892 + Ga0059261_0832 0.28 -0.1
869,892 + Ga0059261_0832 0.28 -0.1
869,892 + Ga0059261_0832 0.28 +0.2
869,892 + Ga0059261_0832 0.28 +0.6
869,893 - -0.3
869,893 - Ga0059261_0832 0.28 +0.4
869,893 - Ga0059261_0832 0.28 -0.6
869,893 - Ga0059261_0832 0.28 +1.5
869,893 - Ga0059261_0832 0.28 +0.4
869,893 - Ga0059261_0832 0.28 -0.0

Or see this region's nucleotide sequence