Experiment: Gentamicin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0689 and Ga0059261_0690 are separated by 2 nucleotides Ga0059261_0690 and Ga0059261_0691 are separated by 89 nucleotides Ga0059261_0691 and Ga0059261_0692 are separated by 15 nucleotides Ga0059261_0692 and Ga0059261_0693 are separated by 4 nucleotides
Ga0059261_0689: Ga0059261_0689 - Predicted carboxypeptidase, at 727,548 to 728,666
_0689
Ga0059261_0690: Ga0059261_0690 - Acetyltransferases, at 728,669 to 729,130
_0690
Ga0059261_0691: Ga0059261_0691 - hypothetical protein, at 729,220 to 729,840
_0691
Ga0059261_0692: Ga0059261_0692 - Predicted secreted protein, at 729,856 to 730,116
_0692
Ga0059261_0693: Ga0059261_0693 - Predicted hydrolase of the metallo-beta-lactamase superfamily, at 730,121 to 731,830
_0693
Position (kb) 729
730 Strain fitness (log2 ratio) -1
0
1
2 at 728.397 kb on + strand, within Ga0059261_0689 at 728.397 kb on + strand, within Ga0059261_0689 at 728.397 kb on + strand, within Ga0059261_0689 at 728.397 kb on + strand, within Ga0059261_0689 at 728.397 kb on + strand, within Ga0059261_0689 at 728.397 kb on + strand, within Ga0059261_0689 at 728.398 kb on - strand, within Ga0059261_0689 at 728.398 kb on - strand, within Ga0059261_0689 at 728.398 kb on - strand, within Ga0059261_0689 at 728.406 kb on + strand, within Ga0059261_0689 at 728.407 kb on - strand, within Ga0059261_0689 at 728.407 kb on - strand, within Ga0059261_0689 at 728.407 kb on - strand, within Ga0059261_0689 at 728.586 kb on + strand at 728.586 kb on + strand at 728.586 kb on + strand at 728.586 kb on + strand at 728.587 kb on - strand at 728.587 kb on - strand at 728.978 kb on + strand, within Ga0059261_0690 at 728.978 kb on + strand, within Ga0059261_0690 at 728.979 kb on - strand, within Ga0059261_0690 at 729.038 kb on + strand, within Ga0059261_0690 at 729.039 kb on - strand, within Ga0059261_0690 at 729.128 kb on + strand at 729.129 kb on - strand at 729.145 kb on + strand at 729.145 kb on + strand at 729.145 kb on + strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.146 kb on - strand at 729.177 kb on + strand at 729.177 kb on + strand at 729.177 kb on + strand at 729.177 kb on + strand at 729.178 kb on - strand at 729.178 kb on - strand at 729.259 kb on + strand at 729.259 kb on + strand at 729.260 kb on - strand at 729.260 kb on - strand at 729.316 kb on + strand, within Ga0059261_0691 at 729.317 kb on - strand, within Ga0059261_0691 at 729.317 kb on - strand, within Ga0059261_0691 at 729.317 kb on - strand, within Ga0059261_0691 at 729.367 kb on + strand, within Ga0059261_0691 at 729.368 kb on - strand, within Ga0059261_0691 at 729.368 kb on - strand, within Ga0059261_0691 at 729.368 kb on - strand, within Ga0059261_0691 at 729.368 kb on - strand, within Ga0059261_0691 at 729.368 kb on - strand, within Ga0059261_0691 at 729.427 kb on + strand, within Ga0059261_0691 at 729.461 kb on - strand, within Ga0059261_0691 at 729.580 kb on + strand, within Ga0059261_0691 at 729.580 kb on + strand, within Ga0059261_0691 at 729.580 kb on + strand, within Ga0059261_0691 at 729.580 kb on + strand, within Ga0059261_0691 at 729.581 kb on - strand, within Ga0059261_0691 at 729.581 kb on - strand, within Ga0059261_0691 at 729.599 kb on + strand, within Ga0059261_0691 at 729.602 kb on - strand, within Ga0059261_0691 at 729.679 kb on + strand, within Ga0059261_0691 at 729.680 kb on - strand, within Ga0059261_0691 at 729.680 kb on - strand, within Ga0059261_0691 at 729.680 kb on - strand, within Ga0059261_0691 at 729.680 kb on - strand, within Ga0059261_0691 at 729.680 kb on - strand, within Ga0059261_0691 at 729.775 kb on + strand, within Ga0059261_0691 at 729.799 kb on + strand at 729.799 kb on + strand at 729.799 kb on + strand at 729.799 kb on + strand at 729.800 kb on - strand at 729.800 kb on - strand at 729.800 kb on - strand at 729.800 kb on - strand at 729.805 kb on + strand at 729.805 kb on + strand at 729.805 kb on + strand at 729.805 kb on + strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.806 kb on - strand at 729.866 kb on + strand at 729.902 kb on + strand, within Ga0059261_0692 at 729.902 kb on + strand, within Ga0059261_0692 at 729.902 kb on + strand, within Ga0059261_0692 at 729.902 kb on + strand, within Ga0059261_0692 at 729.902 kb on + strand, within Ga0059261_0692 at 729.903 kb on - strand, within Ga0059261_0692 at 729.903 kb on - strand, within Ga0059261_0692 at 729.903 kb on - strand, within Ga0059261_0692 at 729.903 kb on - strand, within Ga0059261_0692 at 729.903 kb on - strand, within Ga0059261_0692 at 729.911 kb on + strand, within Ga0059261_0692 at 729.912 kb on - strand, within Ga0059261_0692 at 729.912 kb on - strand, within Ga0059261_0692 at 729.946 kb on - strand, within Ga0059261_0692 at 729.964 kb on + strand, within Ga0059261_0692 at 729.965 kb on - strand, within Ga0059261_0692 at 730.035 kb on + strand, within Ga0059261_0692 at 730.036 kb on - strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.088 kb on + strand, within Ga0059261_0692 at 730.089 kb on - strand, within Ga0059261_0692 at 730.122 kb on + strand at 730.122 kb on + strand at 730.122 kb on + strand at 730.122 kb on + strand at 730.122 kb on + strand at 730.123 kb on - strand at 730.123 kb on - strand at 730.123 kb on - strand at 730.639 kb on - strand at 730.639 kb on - strand, within Ga0059261_0693
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml remove 728,397 + Ga0059261_0689 0.76 +0.2 728,397 + Ga0059261_0689 0.76 -0.0 728,397 + Ga0059261_0689 0.76 -0.3 728,397 + Ga0059261_0689 0.76 -0.4 728,397 + Ga0059261_0689 0.76 -0.0 728,397 + Ga0059261_0689 0.76 +0.2 728,398 - Ga0059261_0689 0.76 -0.5 728,398 - Ga0059261_0689 0.76 +0.4 728,398 - Ga0059261_0689 0.76 +0.7 728,406 + Ga0059261_0689 0.77 +0.9 728,407 - Ga0059261_0689 0.77 +0.9 728,407 - Ga0059261_0689 0.77 +0.5 728,407 - Ga0059261_0689 0.77 -1.2 728,586 + -0.1 728,586 + -0.9 728,586 + +0.4 728,586 + -0.2 728,587 - +0.4 728,587 - +1.0 728,978 + Ga0059261_0690 0.67 +2.3 728,978 + Ga0059261_0690 0.67 -0.1 728,979 - Ga0059261_0690 0.67 +0.4 729,038 + Ga0059261_0690 0.80 -1.3 729,039 - Ga0059261_0690 0.80 +0.4 729,128 + +0.7 729,129 - -0.8 729,145 + +0.5 729,145 + -0.1 729,145 + -0.9 729,146 - -0.6 729,146 - +0.1 729,146 - -0.1 729,146 - +0.2 729,146 - +0.5 729,146 - +0.1 729,146 - -0.4 729,177 + +0.2 729,177 + -0.5 729,177 + +0.5 729,177 + +0.4 729,178 - +1.6 729,178 - +0.2 729,259 + -0.6 729,259 + +0.3 729,260 - -0.0 729,260 - +0.2 729,316 + Ga0059261_0691 0.15 +0.7 729,317 - Ga0059261_0691 0.16 +1.3 729,317 - Ga0059261_0691 0.16 -0.3 729,317 - Ga0059261_0691 0.16 +0.6 729,367 + Ga0059261_0691 0.24 +0.6 729,368 - Ga0059261_0691 0.24 +0.1 729,368 - Ga0059261_0691 0.24 +0.0 729,368 - Ga0059261_0691 0.24 +0.6 729,368 - Ga0059261_0691 0.24 -0.0 729,368 - Ga0059261_0691 0.24 +1.9 729,427 + Ga0059261_0691 0.33 +0.2 729,461 - Ga0059261_0691 0.39 +0.3 729,580 + Ga0059261_0691 0.58 +0.4 729,580 + Ga0059261_0691 0.58 +1.7 729,580 + Ga0059261_0691 0.58 -0.0 729,580 + Ga0059261_0691 0.58 -0.2 729,581 - Ga0059261_0691 0.58 +0.1 729,581 - Ga0059261_0691 0.58 -0.6 729,599 + Ga0059261_0691 0.61 -0.4 729,602 - Ga0059261_0691 0.62 -0.1 729,679 + Ga0059261_0691 0.74 +1.4 729,680 - Ga0059261_0691 0.74 +1.1 729,680 - Ga0059261_0691 0.74 +0.2 729,680 - Ga0059261_0691 0.74 +0.4 729,680 - Ga0059261_0691 0.74 -0.5 729,680 - Ga0059261_0691 0.74 -0.2 729,775 + Ga0059261_0691 0.89 +0.4 729,799 + +0.1 729,799 + +0.0 729,799 + -1.2 729,799 + -0.2 729,800 - -0.3 729,800 - +0.8 729,800 - -0.3 729,800 - -0.9 729,805 + +0.3 729,805 + -0.0 729,805 + -1.7 729,805 + -0.6 729,806 - +1.1 729,806 - -0.3 729,806 - -0.3 729,806 - +1.7 729,806 - +1.1 729,806 - +0.3 729,806 - +1.8 729,866 + -0.1 729,902 + Ga0059261_0692 0.18 -0.8 729,902 + Ga0059261_0692 0.18 +0.7 729,902 + Ga0059261_0692 0.18 +0.1 729,902 + Ga0059261_0692 0.18 +0.3 729,902 + Ga0059261_0692 0.18 -1.6 729,903 - Ga0059261_0692 0.18 +0.7 729,903 - Ga0059261_0692 0.18 +1.0 729,903 - Ga0059261_0692 0.18 -0.3 729,903 - Ga0059261_0692 0.18 -0.8 729,903 - Ga0059261_0692 0.18 -0.9 729,911 + Ga0059261_0692 0.21 +0.2 729,912 - Ga0059261_0692 0.21 +0.6 729,912 - Ga0059261_0692 0.21 -0.1 729,946 - Ga0059261_0692 0.34 +0.0 729,964 + Ga0059261_0692 0.41 -0.2 729,965 - Ga0059261_0692 0.42 +0.6 730,035 + Ga0059261_0692 0.69 +0.7 730,036 - Ga0059261_0692 0.69 +0.5 730,088 + Ga0059261_0692 0.89 +0.2 730,088 + Ga0059261_0692 0.89 -0.6 730,088 + Ga0059261_0692 0.89 -0.4 730,088 + Ga0059261_0692 0.89 -0.6 730,088 + Ga0059261_0692 0.89 +0.3 730,088 + Ga0059261_0692 0.89 -0.4 730,089 - Ga0059261_0692 0.89 -0.9 730,122 + -0.3 730,122 + -1.4 730,122 + -0.4 730,122 + -0.0 730,122 + -0.0 730,123 - +1.1 730,123 - -0.4 730,123 - +0.2 730,639 - +0.7 730,639 - Ga0059261_0693 0.30 -0.7
Or see this region's nucleotide sequence