Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0298

Experiment: Gentamicin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0296 and Ga0059261_0297 are separated by 4 nucleotidesGa0059261_0297 and Ga0059261_0298 are separated by 38 nucleotidesGa0059261_0298 and Ga0059261_0299 are separated by 85 nucleotides Ga0059261_0296: Ga0059261_0296 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 279,372 to 280,826 _0296 Ga0059261_0297: Ga0059261_0297 - hypothetical protein, at 280,831 to 281,484 _0297 Ga0059261_0298: Ga0059261_0298 - TonB family C-terminal domain, at 281,523 to 282,278 _0298 Ga0059261_0299: Ga0059261_0299 - phosphoribosylformylglycinamidine synthase II, at 282,364 to 284,589 _0299 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1 2at 280.550 kb on + strand, within Ga0059261_0296at 280.550 kb on + strand, within Ga0059261_0296at 280.551 kb on - strand, within Ga0059261_0296at 280.551 kb on - strand, within Ga0059261_0296at 280.551 kb on - strand, within Ga0059261_0296at 280.672 kb on + strand, within Ga0059261_0296at 280.701 kb on + strandat 280.701 kb on + strandat 280.701 kb on + strandat 280.701 kb on + strandat 280.702 kb on - strandat 280.717 kb on + strandat 280.718 kb on - strandat 280.718 kb on - strandat 280.988 kb on + strand, within Ga0059261_0297at 280.988 kb on + strand, within Ga0059261_0297at 280.989 kb on - strand, within Ga0059261_0297at 281.192 kb on + strand, within Ga0059261_0297at 281.193 kb on - strand, within Ga0059261_0297at 281.193 kb on - strand, within Ga0059261_0297at 281.193 kb on - strand, within Ga0059261_0297at 281.196 kb on + strand, within Ga0059261_0297at 281.196 kb on + strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.197 kb on - strand, within Ga0059261_0297at 281.201 kb on - strand, within Ga0059261_0297at 281.204 kb on + strand, within Ga0059261_0297at 281.204 kb on + strand, within Ga0059261_0297at 281.205 kb on - strand, within Ga0059261_0297at 281.205 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.211 kb on - strand, within Ga0059261_0297at 281.219 kb on - strand, within Ga0059261_0297at 281.300 kb on + strand, within Ga0059261_0297at 281.300 kb on + strand, within Ga0059261_0297at 281.444 kb on + strandat 281.444 kb on + strandat 281.444 kb on + strandat 281.444 kb on + strandat 281.445 kb on - strandat 281.445 kb on - strandat 281.459 kb on + strandat 281.459 kb on + strandat 281.460 kb on - strandat 281.460 kb on - strandat 281.460 kb on - strandat 281.489 kb on + strandat 281.490 kb on - strandat 281.688 kb on + strand, within Ga0059261_0298at 281.688 kb on + strand, within Ga0059261_0298at 281.688 kb on + strand, within Ga0059261_0298at 281.689 kb on - strandat 281.689 kb on - strand, within Ga0059261_0298at 281.689 kb on - strand, within Ga0059261_0298at 281.689 kb on - strand, within Ga0059261_0298at 281.689 kb on - strand, within Ga0059261_0298at 281.689 kb on - strand, within Ga0059261_0298at 281.733 kb on + strand, within Ga0059261_0298at 281.733 kb on + strand, within Ga0059261_0298at 281.734 kb on - strand, within Ga0059261_0298at 281.734 kb on - strand, within Ga0059261_0298at 281.734 kb on - strand, within Ga0059261_0298at 281.780 kb on - strand, within Ga0059261_0298at 281.970 kb on - strand, within Ga0059261_0298at 282.015 kb on + strand, within Ga0059261_0298at 282.016 kb on - strand, within Ga0059261_0298at 282.072 kb on - strand, within Ga0059261_0298at 282.126 kb on - strand, within Ga0059261_0298at 282.177 kb on + strand, within Ga0059261_0298at 282.177 kb on + strand, within Ga0059261_0298at 282.177 kb on + strand, within Ga0059261_0298at 282.178 kb on - strand, within Ga0059261_0298at 282.178 kb on - strand, within Ga0059261_0298at 282.178 kb on - strand, within Ga0059261_0298at 282.287 kb on + strandat 282.287 kb on + strandat 282.288 kb on - strandat 282.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.005 mg/ml
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280,550 + Ga0059261_0296 0.81 +0.2
280,550 + Ga0059261_0296 0.81 -0.6
280,551 - Ga0059261_0296 0.81 +0.1
280,551 - Ga0059261_0296 0.81 +0.1
280,551 - Ga0059261_0296 0.81 +0.6
280,672 + Ga0059261_0296 0.89 +0.1
280,701 + +0.3
280,701 + +0.3
280,701 + +1.3
280,701 + +1.3
280,702 - +1.5
280,717 + -0.7
280,718 - +0.5
280,718 - -0.3
280,988 + Ga0059261_0297 0.24 -0.2
280,988 + Ga0059261_0297 0.24 -0.5
280,989 - Ga0059261_0297 0.24 -0.8
281,192 + Ga0059261_0297 0.55 -1.2
281,193 - Ga0059261_0297 0.55 -0.3
281,193 - Ga0059261_0297 0.55 +0.2
281,193 - Ga0059261_0297 0.55 +1.2
281,196 + Ga0059261_0297 0.56 -0.3
281,196 + Ga0059261_0297 0.56 +0.9
281,197 - Ga0059261_0297 0.56 +0.2
281,197 - Ga0059261_0297 0.56 +0.5
281,197 - Ga0059261_0297 0.56 +1.0
281,197 - Ga0059261_0297 0.56 +0.3
281,197 - Ga0059261_0297 0.56 +0.4
281,197 - Ga0059261_0297 0.56 -0.3
281,197 - Ga0059261_0297 0.56 -1.6
281,201 - Ga0059261_0297 0.57 +1.5
281,204 + Ga0059261_0297 0.57 -0.3
281,204 + Ga0059261_0297 0.57 -0.2
281,205 - Ga0059261_0297 0.57 +0.7
281,205 - Ga0059261_0297 0.57 +0.4
281,211 - Ga0059261_0297 0.58 +0.3
281,211 - Ga0059261_0297 0.58 -0.2
281,211 - Ga0059261_0297 0.58 -0.3
281,211 - Ga0059261_0297 0.58 -0.1
281,211 - Ga0059261_0297 0.58 +0.1
281,211 - Ga0059261_0297 0.58 -0.6
281,219 - Ga0059261_0297 0.59 +0.0
281,300 + Ga0059261_0297 0.72 -0.2
281,300 + Ga0059261_0297 0.72 +0.1
281,444 + +0.3
281,444 + +0.5
281,444 + -0.0
281,444 + +0.2
281,445 - -0.5
281,445 - +0.2
281,459 + +0.7
281,459 + -0.0
281,460 - +0.1
281,460 - +0.0
281,460 - +0.1
281,489 + -0.6
281,490 - -0.7
281,688 + Ga0059261_0298 0.22 -0.3
281,688 + Ga0059261_0298 0.22 +0.7
281,688 + Ga0059261_0298 0.22 +0.9
281,689 - +1.7
281,689 - Ga0059261_0298 0.22 -0.1
281,689 - Ga0059261_0298 0.22 +0.6
281,689 - Ga0059261_0298 0.22 +0.7
281,689 - Ga0059261_0298 0.22 -0.1
281,689 - Ga0059261_0298 0.22 -0.3
281,733 + Ga0059261_0298 0.28 +0.8
281,733 + Ga0059261_0298 0.28 +0.2
281,734 - Ga0059261_0298 0.28 -0.0
281,734 - Ga0059261_0298 0.28 +0.9
281,734 - Ga0059261_0298 0.28 -0.7
281,780 - Ga0059261_0298 0.34 -0.1
281,970 - Ga0059261_0298 0.59 +0.1
282,015 + Ga0059261_0298 0.65 +0.4
282,016 - Ga0059261_0298 0.65 -0.3
282,072 - Ga0059261_0298 0.73 +0.1
282,126 - Ga0059261_0298 0.80 -0.4
282,177 + Ga0059261_0298 0.87 +0.1
282,177 + Ga0059261_0298 0.87 -0.2
282,177 + Ga0059261_0298 0.87 +0.6
282,178 - Ga0059261_0298 0.87 +2.0
282,178 - Ga0059261_0298 0.87 +0.6
282,178 - Ga0059261_0298 0.87 -0.7
282,287 + +0.7
282,287 + +0.6
282,288 - -0.2
282,288 - +0.6

Or see this region's nucleotide sequence