Experiment: MoYLS4 with Ceftazidime 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2817 and DvMF_2818 are separated by 8 nucleotides DvMF_2818 and DvMF_2819 are separated by 326 nucleotides DvMF_2819 and DvMF_2820 are separated by 81 nucleotides
DvMF_2817: DvMF_2817 - hypothetical protein (RefSeq), at 3,563,002 to 3,563,328
_2817
DvMF_2818: DvMF_2818 - methylated-DNA/protein-cysteine methyltransferase (RefSeq), at 3,563,337 to 3,563,981
_2818
DvMF_2819: DvMF_2819 - conserved hypothetical radical SAM protein (RefSeq), at 3,564,308 to 3,565,426
_2819
DvMF_2820: DvMF_2820 - rod shape-determining protein MreB (RefSeq), at 3,565,508 to 3,566,548
_2820
Position (kb)
3564
3565
3566 Strain fitness (log2 ratio)
-1
0
1 at 3563.323 kb on - strand at 3563.330 kb on + strand at 3563.338 kb on - strand at 3563.501 kb on + strand, within DvMF_2818 at 3563.806 kb on - strand, within DvMF_2818 at 3563.852 kb on - strand, within DvMF_2818 at 3564.249 kb on - strand at 3564.267 kb on + strand at 3564.267 kb on + strand at 3564.275 kb on - strand at 3564.275 kb on - strand at 3564.296 kb on - strand at 3564.348 kb on + strand at 3564.383 kb on + strand at 3564.386 kb on - strand at 3564.484 kb on - strand, within DvMF_2819 at 3564.553 kb on - strand, within DvMF_2819 at 3564.553 kb on - strand, within DvMF_2819 at 3564.707 kb on + strand, within DvMF_2819 at 3564.789 kb on - strand, within DvMF_2819 at 3564.805 kb on + strand, within DvMF_2819 at 3564.853 kb on - strand, within DvMF_2819 at 3564.869 kb on - strand, within DvMF_2819 at 3565.069 kb on - strand, within DvMF_2819 at 3565.177 kb on + strand, within DvMF_2819 at 3565.212 kb on - strand, within DvMF_2819
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 1 mg/ml remove 3,563,323 - -0.2 3,563,330 + -0.6 3,563,338 - -0.3 3,563,501 + DvMF_2818 0.25 -0.7 3,563,806 - DvMF_2818 0.73 -0.4 3,563,852 - DvMF_2818 0.80 -0.9 3,564,249 - -0.0 3,564,267 + -0.0 3,564,267 + -0.6 3,564,275 - -0.7 3,564,275 - -1.2 3,564,296 - -0.1 3,564,348 + +0.0 3,564,383 + -0.6 3,564,386 - -0.5 3,564,484 - DvMF_2819 0.16 -0.8 3,564,553 - DvMF_2819 0.22 -0.2 3,564,553 - DvMF_2819 0.22 -0.5 3,564,707 + DvMF_2819 0.36 -0.4 3,564,789 - DvMF_2819 0.43 -0.6 3,564,805 + DvMF_2819 0.44 -1.0 3,564,853 - DvMF_2819 0.49 -0.7 3,564,869 - DvMF_2819 0.50 -0.3 3,565,069 - DvMF_2819 0.68 +0.1 3,565,177 + DvMF_2819 0.78 -0.4 3,565,212 - DvMF_2819 0.81 -1.6
Or see this region's nucleotide sequence