Experiment: MoYLS4 with Ceftazidime 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2561 and DvMF_2562 overlap by 4 nucleotides DvMF_2562 and DvMF_R0070 are separated by 123 nucleotides DvMF_R0070 and DvMF_2563 are separated by 203 nucleotides DvMF_2563 and DvMF_2564 are separated by 600 nucleotides
DvMF_2561: DvMF_2561 - hypothetical protein (RefSeq), at 3,237,191 to 3,237,337
_2561
DvMF_2562: DvMF_2562 - ThiJ/PfpI domain protein (RefSeq), at 3,237,334 to 3,237,930
_2562
DvMF_R0070: DvMF_R0070 - tRNA-Glu (RefSeq), at 3,238,054 to 3,238,130
_R0070
DvMF_2563: DvMF_2563 - protein of unknown function DUF721 (RefSeq), at 3,238,334 to 3,238,870
_2563
DvMF_2564: DvMF_2564 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,239,471 to 3,241,990
_2564
Position (kb)
3238
3239 Strain fitness (log2 ratio)
-2
-1
0
1 at 3237.590 kb on - strand, within DvMF_2562 at 3237.826 kb on - strand, within DvMF_2562 at 3238.020 kb on - strand at 3238.104 kb on + strand, within DvMF_R0070 at 3238.353 kb on + strand at 3238.392 kb on + strand, within DvMF_2563 at 3238.876 kb on + strand at 3239.023 kb on - strand at 3239.174 kb on - strand at 3239.236 kb on + strand at 3239.319 kb on - strand at 3239.392 kb on + strand at 3239.400 kb on - strand at 3239.407 kb on + strand at 3239.455 kb on + strand at 3239.457 kb on - strand at 3239.595 kb on + strand at 3239.662 kb on - strand at 3239.683 kb on + strand at 3239.813 kb on - strand, within DvMF_2564 at 3239.820 kb on - strand, within DvMF_2564 at 3239.852 kb on - strand, within DvMF_2564
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 1 mg/ml remove 3,237,590 - DvMF_2562 0.43 -0.2 3,237,826 - DvMF_2562 0.82 -0.4 3,238,020 - -0.4 3,238,104 + DvMF_R0070 0.65 -2.1 3,238,353 + -0.9 3,238,392 + DvMF_2563 0.11 -1.0 3,238,876 + -0.5 3,239,023 - -0.1 3,239,174 - -0.0 3,239,236 + -0.4 3,239,319 - +0.2 3,239,392 + -0.1 3,239,400 - +0.2 3,239,407 + -0.4 3,239,455 + -0.4 3,239,457 - -1.0 3,239,595 + -0.4 3,239,662 - -1.0 3,239,683 + -0.7 3,239,813 - DvMF_2564 0.14 -1.0 3,239,820 - DvMF_2564 0.14 -0.3 3,239,852 - DvMF_2564 0.15 -0.5
Or see this region's nucleotide sequence