Experiment: MoYLS4 with Ceftazidime 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1266 and DvMF_1267 are separated by 2 nucleotides DvMF_1267 and DvMF_1268 overlap by 1 nucleotides DvMF_1268 and DvMF_1269 are separated by 16 nucleotides DvMF_1269 and DvMF_1270 are separated by 91 nucleotides DvMF_1270 and DvMF_1271 overlap by 4 nucleotides
DvMF_1266: DvMF_1266 - hypothetical protein (RefSeq), at 1,563,516 to 1,564,160
_1266
DvMF_1267: DvMF_1267 - hypothetical protein (RefSeq), at 1,564,163 to 1,564,372
_1267
DvMF_1268: DvMF_1268 - Mu Gam family protein (RefSeq), at 1,564,372 to 1,564,881
_1268
DvMF_1269: DvMF_1269 - hypothetical protein (RefSeq), at 1,564,898 to 1,565,188
_1269
DvMF_1270: DvMF_1270 - hypothetical protein (RefSeq), at 1,565,280 to 1,565,729
_1270
DvMF_1271: DvMF_1271 - hypothetical protein (RefSeq), at 1,565,726 to 1,566,229
_1271
Position (kb)
1564
1565
1566 Strain fitness (log2 ratio)
-1
0
1 at 1563.907 kb on + strand, within DvMF_1266 at 1563.957 kb on - strand, within DvMF_1266 at 1564.077 kb on - strand, within DvMF_1266 at 1564.128 kb on - strand at 1564.185 kb on - strand, within DvMF_1267 at 1564.380 kb on + strand at 1564.388 kb on - strand at 1564.693 kb on - strand, within DvMF_1268 at 1564.832 kb on - strand at 1564.869 kb on - strand at 1564.901 kb on + strand at 1564.909 kb on - strand at 1564.970 kb on - strand, within DvMF_1269 at 1565.121 kb on - strand, within DvMF_1269 at 1565.393 kb on - strand, within DvMF_1270 at 1565.503 kb on + strand, within DvMF_1270 at 1565.516 kb on - strand, within DvMF_1270 at 1565.526 kb on - strand, within DvMF_1270 at 1565.755 kb on + strand at 1565.842 kb on + strand, within DvMF_1271 at 1566.077 kb on + strand, within DvMF_1271
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 1 mg/ml remove 1,563,907 + DvMF_1266 0.61 -0.6 1,563,957 - DvMF_1266 0.68 -0.7 1,564,077 - DvMF_1266 0.87 -0.5 1,564,128 - -0.8 1,564,185 - DvMF_1267 0.10 -0.0 1,564,380 + -0.7 1,564,388 - -0.5 1,564,693 - DvMF_1268 0.63 -0.5 1,564,832 - -0.1 1,564,869 - -0.7 1,564,901 + +0.2 1,564,909 - -1.0 1,564,970 - DvMF_1269 0.25 -0.8 1,565,121 - DvMF_1269 0.77 -0.8 1,565,393 - DvMF_1270 0.25 -0.2 1,565,503 + DvMF_1270 0.50 -0.3 1,565,516 - DvMF_1270 0.52 -0.6 1,565,526 - DvMF_1270 0.55 -0.1 1,565,755 + -0.3 1,565,842 + DvMF_1271 0.23 -0.4 1,566,077 + DvMF_1271 0.70 -0.5
Or see this region's nucleotide sequence