Experiment: MoYLS4 with Ceftazidime 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1135 and DvMF_1136 overlap by 4 nucleotides DvMF_1136 and DvMF_1137 are separated by 226 nucleotides DvMF_1137 and DvMF_1138 are separated by 5 nucleotides
DvMF_1135: DvMF_1135 - metal dependent phosphohydrolase (RefSeq), at 1,393,458 to 1,394,480
_1135
DvMF_1136: DvMF_1136 - Tetratricopeptide domain protein (RefSeq), at 1,394,477 to 1,395,385
_1136
DvMF_1137: DvMF_1137 - orotidine 5'-phosphate decarboxylase (RefSeq), at 1,395,612 to 1,396,364
_1137
DvMF_1138: DvMF_1138 - Guanylate kinase (RefSeq), at 1,396,370 to 1,396,999
_1138
Position (kb)
1394
1395
1396 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1393.571 kb on - strand, within DvMF_1135 at 1393.636 kb on + strand, within DvMF_1135 at 1394.149 kb on - strand, within DvMF_1135 at 1394.219 kb on - strand, within DvMF_1135 at 1394.305 kb on - strand, within DvMF_1135 at 1394.328 kb on + strand, within DvMF_1135 at 1394.439 kb on + strand at 1394.439 kb on + strand at 1394.537 kb on + strand at 1394.537 kb on + strand at 1394.545 kb on - strand at 1394.545 kb on - strand at 1394.581 kb on + strand, within DvMF_1136 at 1394.748 kb on - strand, within DvMF_1136 at 1394.949 kb on - strand, within DvMF_1136 at 1395.025 kb on + strand, within DvMF_1136 at 1395.214 kb on - strand, within DvMF_1136 at 1395.552 kb on + strand at 1395.689 kb on - strand, within DvMF_1137 at 1395.777 kb on + strand, within DvMF_1137 at 1395.846 kb on + strand, within DvMF_1137 at 1396.012 kb on - strand, within DvMF_1137 at 1396.012 kb on - strand, within DvMF_1137 at 1396.216 kb on - strand, within DvMF_1137
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ceftazidime 1 mg/ml remove 1,393,571 - DvMF_1135 0.11 -0.5 1,393,636 + DvMF_1135 0.17 -1.0 1,394,149 - DvMF_1135 0.68 -0.5 1,394,219 - DvMF_1135 0.74 +0.3 1,394,305 - DvMF_1135 0.83 -1.1 1,394,328 + DvMF_1135 0.85 -0.5 1,394,439 + -0.5 1,394,439 + -0.0 1,394,537 + +0.1 1,394,537 + -0.1 1,394,545 - +0.0 1,394,545 - +0.2 1,394,581 + DvMF_1136 0.11 +0.4 1,394,748 - DvMF_1136 0.30 +0.2 1,394,949 - DvMF_1136 0.52 +0.3 1,395,025 + DvMF_1136 0.60 +0.6 1,395,214 - DvMF_1136 0.81 -0.0 1,395,552 + -0.5 1,395,689 - DvMF_1137 0.10 -3.6 1,395,777 + DvMF_1137 0.22 -1.7 1,395,846 + DvMF_1137 0.31 -2.5 1,396,012 - DvMF_1137 0.53 -4.6 1,396,012 - DvMF_1137 0.53 -4.0 1,396,216 - DvMF_1137 0.80 -4.7
Or see this region's nucleotide sequence