Strain Fitness in Shewanella loihica PV-4 around Shew_2731

Experiment: Choline Lysine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 10 mM
3,229,344	-		Shew_2730	0.48	-0.4
3,229,676	-				+0.1
3,229,686	-				+0.1
3,229,722	-				+0.1
3,229,734	-				+0.1
3,229,754	+				+0.0
3,229,762	-				-1.0
3,229,766	+				+0.2
3,229,774	-				-0.1
3,229,774	-				+0.2
3,229,774	-				-1.0
3,229,774	-				-0.3
3,229,774	-				+0.0
3,229,774	-				+0.7
3,229,776	+				+0.7
3,229,776	+				-0.2
3,229,783	-				-0.5
3,229,806	+				-0.1
3,229,819	-				+0.4
3,229,830	+				+0.5
3,229,833	-				+0.1
3,229,872	+				+0.1
3,229,934	+		Shew_2731	0.18	+0.2
3,229,946	+		Shew_2731	0.20	+1.9
3,229,946	+		Shew_2731	0.20	-2.8
3,229,954	-		Shew_2731	0.21	+0.0
3,229,954	-		Shew_2731	0.21	+0.0
3,229,954	-		Shew_2731	0.21	-0.3
3,229,954	-		Shew_2731	0.21	+0.3
3,229,954	-		Shew_2731	0.21	-0.1
3,229,965	-		Shew_2731	0.23	+0.2
3,230,072	+		Shew_2731	0.42	+0.4
3,230,077	+		Shew_2731	0.43	-0.3
3,230,083	-		Shew_2731	0.44	+0.1
3,230,085	+		Shew_2731	0.45	+0.6
3,230,090	+		Shew_2731	0.45	+0.0
3,230,090	+		Shew_2731	0.45	+0.6
3,230,093	-		Shew_2731	0.46	-0.7
3,230,095	+		Shew_2731	0.46	+0.1
3,230,098	-		Shew_2731	0.47	-0.2
3,230,098	-		Shew_2731	0.47	+0.1
3,230,168	+		Shew_2731	0.59	+0.4
3,230,192	+		Shew_2731	0.64	+0.3
3,230,200	-		Shew_2731	0.65	+0.2
3,230,218	+		Shew_2731	0.68	+0.0
3,230,218	+		Shew_2731	0.68	+0.4
3,230,218	+		Shew_2731	0.68	+0.0
3,230,218	+		Shew_2731	0.68	+0.2
3,230,224	+		Shew_2731	0.69	+0.4
3,230,224	+		Shew_2731	0.69	+0.3
3,230,226	-		Shew_2731	0.70	+0.2
3,230,226	-		Shew_2731	0.70	+0.3
3,230,249	+		Shew_2731	0.74	+0.6
3,230,260	+		Shew_2731	0.76	+0.1
3,230,260	+		Shew_2731	0.76	+0.2
3,230,260	+		Shew_2731	0.76	+0.0
3,230,260	+		Shew_2731	0.76	+0.2
3,230,260	+		Shew_2731	0.76	+0.4
3,230,268	-		Shew_2731	0.77	+0.5
3,230,268	-		Shew_2731	0.77	+0.1
3,230,268	-		Shew_2731	0.77	+0.4
3,230,268	-		Shew_2731	0.77	+0.2
3,230,268	-		Shew_2731	0.77	-0.1
3,230,268	-		Shew_2731	0.77	-2.5
3,230,308	+		Shew_2731	0.84	+0.1
3,230,321	-		Shew_2731	0.87	-0.1
3,230,321	+		Shew_2731	0.87	-0.3
3,230,321	-		Shew_2731	0.87	+0.2
3,230,330	+		Shew_2731	0.88	-0.1
3,230,330	+		Shew_2731	0.88	-0.4
3,230,330	+		Shew_2731	0.88	+0.3
3,230,330	+		Shew_2731	0.88	+0.3
3,230,330	+		Shew_2731	0.88	-0.1
3,230,330	+		Shew_2731	0.88	-0.4
3,230,330	+		Shew_2731	0.88	+0.1
3,230,330	+		Shew_2731	0.88	+0.4
3,230,330	+		Shew_2731	0.88	+0.0
3,230,330	+		Shew_2731	0.88	+0.2
3,230,330	+		Shew_2731	0.88	+0.7
3,230,330	+		Shew_2731	0.88	+0.4
3,230,330	+		Shew_2731	0.88	+0.1
3,230,330	+		Shew_2731	0.88	+0.1
3,230,330	+		Shew_2731	0.88	+0.2
3,230,330	+		Shew_2731	0.88	-1.8
3,230,338	-		Shew_2731	0.90	+0.2
3,230,338	-		Shew_2731	0.90	+0.2
3,230,338	-		Shew_2731	0.90	-0.2
3,230,338	-		Shew_2731	0.90	-0.1
3,230,338	-		Shew_2731	0.90	+0.5
3,230,338	-		Shew_2731	0.90	-0.0
3,230,338	-		Shew_2731	0.90	+0.7
3,230,338	-		Shew_2731	0.90	+0.5
3,230,338	-		Shew_2731	0.90	+0.1
3,230,338	-		Shew_2731	0.90	+0.7
3,230,338	-		Shew_2731	0.90	+1.0
3,230,338	-		Shew_2731	0.90	+0.1
3,230,338	-		Shew_2731	0.90	+0.2
3,230,338	-		Shew_2731	0.90	+0.6
3,230,338	-		Shew_2731	0.90	-0.1
3,230,338	-		Shew_2731	0.90	+0.3
3,230,338	-		Shew_2731	0.90	-0.3
3,230,338	-		Shew_2731	0.90	+0.1
3,230,338	-		Shew_2731	0.90	-0.7
3,230,340	+				+0.7
3,230,340	+				-0.0
3,230,348	-				+0.3
3,230,348	-				-0.3
3,230,350	+				+0.0
3,230,350	+				+0.1
3,230,350	+				-0.0
3,230,350	+				+0.0
3,230,350	+				-0.2
3,230,353	+				-0.0
3,230,358	-				+0.2
3,230,361	-				-0.1
3,230,396	+				+0.4
3,230,396	+				+0.9
3,230,396	+				+0.3
3,230,396	+				+0.4
3,230,396	+				+0.3
3,230,404	-				+0.0
3,230,404	-				+0.4
3,230,404	-				+0.0
3,230,404	-				-0.6
3,230,404	-				+0.5
3,230,404	-				+0.4
3,230,404	-				-0.1
3,230,412	-				-0.5
3,230,438	+				+0.2
3,230,438	+				+0.6
3,230,446	-				+1.1
3,230,458	+				+0.5
3,230,488	+		Shew_2732	0.13	+0.4
3,230,496	-		Shew_2732	0.14	-0.1
3,230,500	+		Shew_2732	0.15	+0.3
3,230,500	+		Shew_2732	0.15	+0.7
3,230,500	+		Shew_2732	0.15	-0.1
3,230,500	+		Shew_2732	0.15	+0.6
3,230,508	-		Shew_2732	0.17	-1.9
3,230,508	-		Shew_2732	0.17	+0.1
3,230,514	-		Shew_2732	0.18	+0.4
3,230,515	-		Shew_2732	0.18	+0.2
3,230,535	+		Shew_2732	0.22	+0.2
3,230,552	-		Shew_2732	0.26	+1.5
3,230,563	+		Shew_2732	0.28	+0.6
3,230,592	+		Shew_2732	0.34	+0.8
3,230,600	-		Shew_2732	0.36	-0.8
3,230,605	+		Shew_2732	0.37	+0.1
3,230,605	+		Shew_2732	0.37	+0.1
3,230,607	-		Shew_2732	0.38	+0.1
3,230,613	-		Shew_2732	0.39	+0.0
3,230,613	-		Shew_2732	0.39	+0.3
3,230,613	-		Shew_2732	0.39	+0.1
3,230,613	-		Shew_2732	0.39	+0.2
3,230,614	+		Shew_2732	0.39	-0.3
3,230,614	+		Shew_2732	0.39	+0.2
3,230,615	+		Shew_2732	0.39	+0.7
3,230,615	+		Shew_2732	0.39	+0.1
3,230,615	+		Shew_2732	0.39	+0.7
3,230,615	+		Shew_2732	0.39	-0.3
3,230,615	+		Shew_2732	0.39	-0.7
3,230,615	+		Shew_2732	0.39	+0.5
3,230,616	+		Shew_2732	0.39	-1.0
3,230,616	+		Shew_2732	0.39	-0.4
3,230,616	+		Shew_2732	0.39	-0.2
3,230,616	+		Shew_2732	0.39	+0.0
3,230,616	+		Shew_2732	0.39	+1.2
3,230,616	+		Shew_2732	0.39	+0.0
3,230,616	+		Shew_2732	0.39	+0.2
3,230,616	+		Shew_2732	0.39	+0.1
3,230,616	+		Shew_2732	0.39	+0.1
3,230,616	+		Shew_2732	0.39	-0.4
3,230,616	+		Shew_2732	0.39	+0.1
3,230,616	+		Shew_2732	0.39	+0.7
3,230,616	+		Shew_2732	0.39	+0.1
3,230,616	+		Shew_2732	0.39	+0.5
3,230,618	-		Shew_2732	0.40	-0.3
3,230,622	-		Shew_2732	0.41	+0.4
3,230,622	-		Shew_2732	0.41	+0.1
3,230,622	-		Shew_2732	0.41	+0.8
3,230,622	-		Shew_2732	0.41	-0.2
3,230,622	-		Shew_2732	0.41	+0.5
3,230,622	-		Shew_2732	0.41	-0.8
3,230,622	-		Shew_2732	0.41	+0.0
3,230,622	-		Shew_2732	0.41	+1.3
3,230,622	-		Shew_2732	0.41	+0.4
3,230,622	-		Shew_2732	0.41	+0.3
3,230,622	-		Shew_2732	0.41	+0.5
3,230,622	-		Shew_2732	0.41	-0.4
3,230,624	-		Shew_2732	0.41	+0.4
3,230,624	-		Shew_2732	0.41	+0.1
3,230,624	-		Shew_2732	0.41	+0.2
3,230,624	-		Shew_2732	0.41	+0.2
3,230,624	-		Shew_2732	0.41	+1.3
3,230,624	-		Shew_2732	0.41	-0.0
3,230,624	-		Shew_2732	0.41	-0.5
3,230,624	-		Shew_2732	0.41	+0.0
3,230,624	-		Shew_2732	0.41	-0.1
3,230,624	-		Shew_2732	0.41	+0.2
3,230,624	-		Shew_2732	0.41	+0.3
3,230,624	-		Shew_2732	0.41	+0.6
3,230,624	-		Shew_2732	0.41	+1.4
3,230,624	-		Shew_2732	0.41	+0.2
3,230,631	-		Shew_2732	0.43	+0.6
3,230,666	+		Shew_2732	0.50	+1.3
3,230,680	+		Shew_2732	0.53	-1.3
3,230,680	+		Shew_2732	0.53	+0.2
3,230,688	+		Shew_2732	0.55	+0.0
3,230,688	+		Shew_2732	0.55	-0.2
3,230,688	+		Shew_2732	0.55	+0.5
3,230,688	-		Shew_2732	0.55	-0.4
3,230,688	+		Shew_2732	0.55	+0.3
3,230,696	-		Shew_2732	0.56	+0.5
3,230,696	-		Shew_2732	0.56	-0.1
3,230,696	-		Shew_2732	0.56	+0.1
3,230,704	-		Shew_2732	0.58	-0.7
3,230,722	-		Shew_2732	0.62	-0.1
3,230,737	+		Shew_2732	0.65	+0.4
3,230,755	-		Shew_2732	0.69	+0.5
3,230,803	-		Shew_2732	0.79	-0.2
3,230,814	+		Shew_2732	0.81	+0.2
3,230,827	-		Shew_2732	0.84	+0.6
3,230,853	+		Shew_2732	0.89	+0.2
3,230,877	+				-0.4
3,230,881	-				-0.1
3,230,886	-				+0.3
3,230,889	+				+0.8
3,230,897	-				+0.6
3,230,897	-				+0.3
3,230,897	-				+0.3
3,230,898	+				+0.2
3,230,900	+				-0.2
3,230,900	+				+0.2
3,230,900	+				+0.4
3,230,900	+				-0.2
3,230,900	+				+0.0
3,230,900	+				-0.9
3,230,902	+				+0.2
3,230,907	+				+0.1
3,230,908	-				+0.2
3,230,908	-				-0.7
3,230,908	-				+0.2
3,230,908	-				-0.1
3,230,908	-				-1.3
3,230,908	-				-0.1
3,230,908	-				+0.1
3,230,908	-				-0.2
3,230,908	-				+1.6
3,230,908	-				+0.6
3,230,908	-				-0.2
3,230,910	+				+0.3
3,230,910	+				+0.4
3,230,910	+				+0.5
3,230,910	+				+0.5
3,230,910	+				+0.8
3,230,910	+				-1.4
3,230,918	-				+0.3
3,230,918	-				-0.6
3,230,918	-				-0.3
3,230,918	-				+0.7
3,230,918	-				+0.2
3,230,918	-				-0.2
3,230,928	-				+0.9
3,230,929	-				-2.0
3,230,975	+				+0.8
3,230,990	+				-0.3
3,230,999	-				-0.0
3,231,001	+				+2.1
3,231,010	+				+0.7
3,231,010	+				+0.2
3,231,018	-				+0.6
3,231,018	-				+0.2
3,231,018	-				+0.2
3,231,026	-				+0.0
3,231,034	+				+1.3
3,231,034	+				+0.1
3,231,035	+				+0.5
3,231,035	+				+0.9
3,231,056	-		Shew_2733	0.12	+0.4
3,231,056	-		Shew_2733	0.12	+0.6
3,231,195	+		Shew_2733	0.52	+1.1
3,231,199	-		Shew_2733	0.54	-0.3
3,231,205	+		Shew_2733	0.55	+0.6
3,231,206	+		Shew_2733	0.56	+0.8
3,231,206	+		Shew_2733	0.56	-0.3
3,231,206	+		Shew_2733	0.56	+0.1
3,231,213	-		Shew_2733	0.58	+1.4
3,231,214	-		Shew_2733	0.58	+0.2
3,231,214	-		Shew_2733	0.58	+0.7
3,231,220	-		Shew_2733	0.60	+0.3
3,231,220	-		Shew_2733	0.60	-0.2
3,231,220	-		Shew_2733	0.60	-0.3
3,231,269	-		Shew_2733	0.74	+0.1
3,231,275	+		Shew_2733	0.76	+0.4
3,231,276	+		Shew_2733	0.76	+0.4
3,231,276	+		Shew_2733	0.76	+1.2
3,231,276	+		Shew_2733	0.76	+0.4
3,231,276	+		Shew_2733	0.76	+0.6
3,231,283	-		Shew_2733	0.78	+0.0
3,231,302	-		Shew_2733	0.83	+0.3
3,231,306	+		Shew_2733	0.85	+0.2
3,231,306	+		Shew_2733	0.85	+2.0
3,231,306	+		Shew_2733	0.85	-0.1
3,231,307	+		Shew_2733	0.85	+0.3
3,231,307	+		Shew_2733	0.85	-0.2
3,231,307	+		Shew_2733	0.85	-0.2
3,231,314	-		Shew_2733	0.87	-0.5
3,231,314	-		Shew_2733	0.87	+0.3
3,231,314	-		Shew_2733	0.87	+0.4
3,231,315	-		Shew_2733	0.87	+0.1
3,231,315	-		Shew_2733	0.87	+0.2
3,231,315	-		Shew_2733	0.87	-0.3
3,231,315	-		Shew_2733	0.87	+0.4
3,231,315	-		Shew_2733	0.87	+0.6
3,231,325	-				-0.7
3,231,365	+				+0.8
3,231,365	+				+0.2
3,231,365	+				+0.2
3,231,365	+				+0.1
3,231,365	+				+0.4
3,231,365	+				+0.1
3,231,365	+				+0.6
3,231,365	+				+0.1
3,231,370	+				+1.2
3,231,373	-				+0.1
3,231,373	-				+0.0
3,231,373	-				-1.1
3,231,373	-				+0.4
3,231,373	-				+0.4
3,231,373	-				+0.1
3,231,373	-				-0.1
3,231,373	-				+0.2
3,231,380	-				-0.1
3,231,395	+				+0.1
3,231,395	+				-0.0
3,231,395	-				+0.1
3,231,395	+				+0.0