Experiment: Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0770 and Shew_0771 are separated by 220 nucleotides Shew_0771 and Shew_0772 are separated by 119 nucleotides
Shew_0770: Shew_0770 - tyrosine recombinase XerD (RefSeq), at 879,109 to 880,020
_0770
Shew_0771: Shew_0771 - thiol:disulfide interchange protein DsbC (RefSeq), at 880,241 to 880,966
_0771
Shew_0772: Shew_0772 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 881,086 to 882,810
_0772
Position (kb) 880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 879.257 kb on + strand, within Shew_0770 at 879.354 kb on - strand, within Shew_0770 at 879.539 kb on + strand, within Shew_0770 at 879.549 kb on + strand, within Shew_0770 at 879.701 kb on + strand, within Shew_0770 at 879.803 kb on + strand, within Shew_0770 at 879.918 kb on + strand, within Shew_0770 at 879.993 kb on + strand at 880.008 kb on + strand at 880.377 kb on + strand, within Shew_0771 at 880.525 kb on - strand, within Shew_0771 at 880.550 kb on - strand, within Shew_0771 at 880.826 kb on - strand, within Shew_0771 at 880.860 kb on + strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 881.031 kb on + strand at 881.708 kb on + strand, within Shew_0772 at 881.900 kb on - strand, within Shew_0772 at 881.947 kb on - strand, within Shew_0772
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 10 mM remove 879,257 + Shew_0770 0.16 -3.8 879,354 - Shew_0770 0.27 -2.2 879,539 + Shew_0770 0.47 +0.0 879,549 + Shew_0770 0.48 -3.2 879,701 + Shew_0770 0.65 -2.1 879,803 + Shew_0770 0.76 -2.6 879,918 + Shew_0770 0.89 -2.4 879,993 + -2.2 880,008 + -0.2 880,377 + Shew_0771 0.19 -1.2 880,525 - Shew_0771 0.39 -0.4 880,550 - Shew_0771 0.43 -2.4 880,826 - Shew_0771 0.81 -1.6 880,860 + Shew_0771 0.85 -1.6 880,868 - Shew_0771 0.86 -1.7 880,868 - Shew_0771 0.86 -1.3 881,031 + +1.5 881,708 + Shew_0772 0.36 -0.2 881,900 - Shew_0772 0.47 -0.4 881,947 - Shew_0772 0.50 -0.6
Or see this region's nucleotide sequence