Experiment: Choline Lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0479 and Shew_0480 are separated by 69 nucleotides Shew_0480 and Shew_0481 are separated by 134 nucleotides Shew_0481 and Shew_0482 are separated by 289 nucleotides
Shew_0479: Shew_0479 - HipA domain-containing protein (RefSeq), at 536,139 to 537,440
_0479
Shew_0480: Shew_0480 - Sel1 domain-containing protein (RefSeq), at 537,510 to 538,568
_0480
Shew_0481: Shew_0481 - hypothetical protein (RefSeq), at 538,703 to 539,107
_0481
Shew_0482: Shew_0482 - hypothetical protein (RefSeq), at 539,397 to 540,563
_0482
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1 at 536.672 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.785 kb on - strand, within Shew_0479 at 536.943 kb on + strand, within Shew_0479 at 537.104 kb on + strand, within Shew_0479 at 537.434 kb on + strand at 537.443 kb on - strand at 537.961 kb on - strand, within Shew_0480 at 538.003 kb on + strand, within Shew_0480 at 538.497 kb on - strand at 538.548 kb on + strand at 538.563 kb on + strand at 538.563 kb on + strand at 538.812 kb on + strand, within Shew_0481 at 538.898 kb on - strand, within Shew_0481 at 538.902 kb on - strand, within Shew_0481 at 538.948 kb on + strand, within Shew_0481 at 539.021 kb on + strand, within Shew_0481 at 539.077 kb on - strand at 539.105 kb on - strand at 539.190 kb on - strand at 539.192 kb on + strand at 539.200 kb on - strand at 539.320 kb on - strand at 539.551 kb on - strand, within Shew_0482 at 539.553 kb on + strand, within Shew_0482
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 10 mM remove 536,672 - Shew_0479 0.41 -0.1 536,785 - Shew_0479 0.50 +0.3 536,785 - Shew_0479 0.50 +0.0 536,785 - Shew_0479 0.50 +0.1 536,785 - Shew_0479 0.50 +0.2 536,943 + Shew_0479 0.62 -0.3 537,104 + Shew_0479 0.74 -1.9 537,434 + +0.5 537,443 - -0.1 537,961 - Shew_0480 0.43 -1.0 538,003 + Shew_0480 0.47 -0.1 538,497 - -0.1 538,548 + -0.5 538,563 + -0.5 538,563 + +0.2 538,812 + Shew_0481 0.27 +0.2 538,898 - Shew_0481 0.48 -0.3 538,902 - Shew_0481 0.49 -0.1 538,948 + Shew_0481 0.60 +0.1 539,021 + Shew_0481 0.79 +1.5 539,077 - +0.0 539,105 - -0.2 539,190 - +0.2 539,192 + +0.3 539,200 - -0.4 539,320 - -0.0 539,551 - Shew_0482 0.13 -0.1 539,553 + Shew_0482 0.13 -0.1
Or see this region's nucleotide sequence