Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4194

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4193 and Dshi_4194 are separated by 20 nucleotidesDshi_4194 and Dshi_4195 overlap by 1 nucleotides Dshi_4193: Dshi_4193 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 38,969 to 40,258 _4193 Dshi_4194: Dshi_4194 - Gamma-glutamyltransferase (RefSeq), at 40,279 to 41,874 _4194 Dshi_4195: Dshi_4195 - protein of unknown function DUF112 transmembrane (RefSeq), at 41,874 to 43,385 _4195 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1at 39.448 kb on + strand, within Dshi_4193at 39.721 kb on - strand, within Dshi_4193at 39.915 kb on - strand, within Dshi_4193at 40.101 kb on + strand, within Dshi_4193at 40.275 kb on - strandat 40.561 kb on + strand, within Dshi_4194at 40.791 kb on + strand, within Dshi_4194at 41.354 kb on + strand, within Dshi_4194at 41.919 kb on - strandat 41.986 kb on + strandat 42.071 kb on + strand, within Dshi_4195at 42.137 kb on + strand, within Dshi_4195at 42.244 kb on - strand, within Dshi_4195at 42.328 kb on - strand, within Dshi_4195at 42.353 kb on + strand, within Dshi_4195at 42.444 kb on - strand, within Dshi_4195at 42.529 kb on + strand, within Dshi_4195at 42.674 kb on - strand, within Dshi_4195at 42.685 kb on + strand, within Dshi_4195at 42.809 kb on - strand, within Dshi_4195

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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39,448 + Dshi_4193 0.37 +1.1
39,721 - Dshi_4193 0.58 +0.6
39,915 - Dshi_4193 0.73 +1.6
40,101 + Dshi_4193 0.88 -2.5
40,275 - -1.2
40,561 + Dshi_4194 0.18 -0.2
40,791 + Dshi_4194 0.32 -0.4
41,354 + Dshi_4194 0.67 +0.2
41,919 - +1.1
41,986 + -1.8
42,071 + Dshi_4195 0.13 -0.2
42,137 + Dshi_4195 0.17 +0.6
42,244 - Dshi_4195 0.24 -0.3
42,328 - Dshi_4195 0.30 -0.2
42,353 + Dshi_4195 0.32 +0.5
42,444 - Dshi_4195 0.38 +0.4
42,529 + Dshi_4195 0.43 -1.4
42,674 - Dshi_4195 0.53 -0.3
42,685 + Dshi_4195 0.54 -0.1
42,809 - Dshi_4195 0.62 -0.6

Or see this region's nucleotide sequence