Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4084

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4082 and Dshi_4083 overlap by 4 nucleotidesDshi_4083 and Dshi_4084 are separated by 122 nucleotidesDshi_4084 and Dshi_4085 overlap by 14 nucleotidesDshi_4085 and Dshi_4086 are separated by 143 nucleotidesDshi_4086 and Dshi_4087 overlap by 14 nucleotidesDshi_4087 and Dshi_4088 are separated by 5 nucleotides Dshi_4082: Dshi_4082 - Integrase catalytic region (RefSeq), at 16,978 to 18,471 _4082 Dshi_4083: Dshi_4083 - ATP-binding protein (RefSeq), at 18,468 to 19,292 _4083 Dshi_4084: Dshi_4084 - Resolvase domain (RefSeq), at 19,415 to 19,981 _4084 Dshi_4085: Dshi_4085 - WGR domain protein (RefSeq), at 19,968 to 20,222 _4085 Dshi_4086: Dshi_4086 - hypothetical protein (RefSeq), at 20,366 to 20,572 _4086 Dshi_4087: Dshi_4087 - plasmid stabilization system (RefSeq), at 20,559 to 20,852 _4087 Dshi_4088: Dshi_4088 - hypothetical protein (RefSeq), at 20,858 to 21,250 _4088 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 19.324 kb on + strandat 19.324 kb on + strandat 19.334 kb on + strandat 19.337 kb on + strandat 19.339 kb on + strandat 19.339 kb on + strandat 19.342 kb on - strandat 19.342 kb on - strandat 19.347 kb on - strandat 19.419 kb on + strandat 19.420 kb on + strandat 19.420 kb on + strandat 19.426 kb on - strandat 19.427 kb on - strandat 19.428 kb on - strandat 19.453 kb on + strandat 19.453 kb on + strandat 19.461 kb on - strandat 19.461 kb on - strandat 19.461 kb on - strandat 19.466 kb on - strandat 19.476 kb on - strand, within Dshi_4084at 19.476 kb on - strand, within Dshi_4084at 19.491 kb on + strand, within Dshi_4084at 19.593 kb on + strand, within Dshi_4084at 19.620 kb on - strand, within Dshi_4084at 19.728 kb on + strand, within Dshi_4084at 19.751 kb on - strand, within Dshi_4084at 19.751 kb on - strand, within Dshi_4084at 19.790 kb on + strand, within Dshi_4084at 19.790 kb on + strand, within Dshi_4084at 19.790 kb on + strand, within Dshi_4084at 19.796 kb on - strand, within Dshi_4084at 19.796 kb on - strand, within Dshi_4084at 19.798 kb on - strand, within Dshi_4084at 19.798 kb on - strand, within Dshi_4084at 19.833 kb on + strand, within Dshi_4084at 19.841 kb on - strand, within Dshi_4084at 19.875 kb on + strand, within Dshi_4084at 19.885 kb on + strand, within Dshi_4084at 19.894 kb on - strand, within Dshi_4084at 19.900 kb on + strand, within Dshi_4084at 19.900 kb on + strand, within Dshi_4084at 19.908 kb on - strand, within Dshi_4084at 19.908 kb on - strand, within Dshi_4084at 19.961 kb on - strandat 20.012 kb on + strand, within Dshi_4085at 20.012 kb on + strand, within Dshi_4085at 20.069 kb on + strand, within Dshi_4085at 20.069 kb on + strand, within Dshi_4085at 20.077 kb on - strand, within Dshi_4085at 20.080 kb on + strand, within Dshi_4085at 20.121 kb on - strand, within Dshi_4085at 20.121 kb on - strand, within Dshi_4085at 20.136 kb on - strand, within Dshi_4085at 20.145 kb on + strand, within Dshi_4085at 20.153 kb on - strand, within Dshi_4085at 20.160 kb on + strand, within Dshi_4085at 20.180 kb on + strand, within Dshi_4085at 20.193 kb on - strand, within Dshi_4085at 20.203 kb on - strandat 20.213 kb on + strandat 20.218 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.223 kb on + strandat 20.228 kb on + strandat 20.228 kb on + strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.231 kb on - strandat 20.233 kb on + strandat 20.236 kb on - strandat 20.236 kb on - strandat 20.236 kb on - strandat 20.241 kb on - strandat 20.253 kb on - strandat 20.300 kb on - strandat 20.302 kb on + strandat 20.551 kb on + strand, within Dshi_4086at 20.566 kb on + strandat 20.566 kb on + strandat 20.566 kb on + strandat 20.574 kb on - strandat 20.585 kb on + strandat 20.593 kb on - strand, within Dshi_4087at 20.600 kb on + strand, within Dshi_4087at 20.640 kb on + strand, within Dshi_4087at 20.640 kb on + strand, within Dshi_4087at 20.640 kb on + strand, within Dshi_4087at 20.677 kb on + strand, within Dshi_4087at 20.677 kb on + strand, within Dshi_4087at 20.677 kb on + strand, within Dshi_4087at 20.678 kb on + strand, within Dshi_4087at 20.685 kb on + strand, within Dshi_4087at 20.685 kb on + strand, within Dshi_4087at 20.685 kb on + strand, within Dshi_4087at 20.685 kb on + strand, within Dshi_4087at 20.685 kb on - strand, within Dshi_4087at 20.685 kb on - strand, within Dshi_4087at 20.696 kb on - strand, within Dshi_4087at 20.698 kb on + strand, within Dshi_4087at 20.698 kb on + strand, within Dshi_4087at 20.699 kb on - strand, within Dshi_4087at 20.699 kb on - strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.700 kb on + strand, within Dshi_4087at 20.706 kb on - strand, within Dshi_4087at 20.716 kb on - strand, within Dshi_4087at 20.718 kb on - strand, within Dshi_4087at 20.718 kb on - strand, within Dshi_4087at 20.718 kb on - strand, within Dshi_4087at 20.736 kb on + strand, within Dshi_4087at 20.736 kb on + strand, within Dshi_4087at 20.736 kb on + strand, within Dshi_4087at 20.747 kb on - strand, within Dshi_4087at 20.762 kb on + strand, within Dshi_4087at 20.771 kb on + strand, within Dshi_4087at 20.793 kb on + strand, within Dshi_4087at 20.801 kb on + strand, within Dshi_4087at 20.816 kb on - strand, within Dshi_4087at 20.833 kb on - strandat 20.870 kb on - strandat 20.871 kb on + strandat 20.905 kb on - strand, within Dshi_4088at 20.945 kb on - strand, within Dshi_4088at 20.946 kb on + strand, within Dshi_4088at 20.949 kb on - strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.951 kb on + strand, within Dshi_4088at 20.952 kb on + strand, within Dshi_4088at 20.961 kb on + strand, within Dshi_4088

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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19,324 + -1.6
19,324 + +0.4
19,334 + -0.3
19,337 + +0.8
19,339 + +0.4
19,339 + -0.1
19,342 - -0.2
19,342 - +0.7
19,347 - -0.4
19,419 + +1.1
19,420 + -0.3
19,420 + -0.0
19,426 - -0.0
19,427 - -1.9
19,428 - +0.3
19,453 + +0.7
19,453 + -0.5
19,461 - +0.7
19,461 - +1.1
19,461 - +0.7
19,466 - +0.6
19,476 - Dshi_4084 0.11 -1.3
19,476 - Dshi_4084 0.11 +0.1
19,491 + Dshi_4084 0.13 +0.2
19,593 + Dshi_4084 0.31 +0.2
19,620 - Dshi_4084 0.36 -0.2
19,728 + Dshi_4084 0.55 -0.9
19,751 - Dshi_4084 0.59 +0.1
19,751 - Dshi_4084 0.59 -1.3
19,790 + Dshi_4084 0.66 -0.5
19,790 + Dshi_4084 0.66 +0.1
19,790 + Dshi_4084 0.66 +0.8
19,796 - Dshi_4084 0.67 -0.2
19,796 - Dshi_4084 0.67 -0.2
19,798 - Dshi_4084 0.68 -0.4
19,798 - Dshi_4084 0.68 -0.9
19,833 + Dshi_4084 0.74 -0.2
19,841 - Dshi_4084 0.75 -0.9
19,875 + Dshi_4084 0.81 +0.3
19,885 + Dshi_4084 0.83 -1.3
19,894 - Dshi_4084 0.84 +0.5
19,900 + Dshi_4084 0.86 -1.9
19,900 + Dshi_4084 0.86 -0.2
19,908 - Dshi_4084 0.87 -0.0
19,908 - Dshi_4084 0.87 -0.0
19,961 - +1.6
20,012 + Dshi_4085 0.17 +1.1
20,012 + Dshi_4085 0.17 +1.7
20,069 + Dshi_4085 0.40 -0.3
20,069 + Dshi_4085 0.40 -0.3
20,077 - Dshi_4085 0.43 +0.4
20,080 + Dshi_4085 0.44 +0.4
20,121 - Dshi_4085 0.60 +0.7
20,121 - Dshi_4085 0.60 +1.4
20,136 - Dshi_4085 0.66 +0.3
20,145 + Dshi_4085 0.69 -0.4
20,153 - Dshi_4085 0.73 +1.5
20,160 + Dshi_4085 0.75 -0.4
20,180 + Dshi_4085 0.83 -1.1
20,193 - Dshi_4085 0.88 +0.9
20,203 - -0.3
20,213 + -0.2
20,218 + +0.9
20,223 + +0.4
20,223 + -0.9
20,223 + -0.1
20,223 + -0.3
20,223 + +1.4
20,223 + +0.3
20,223 + +0.2
20,223 + +1.7
20,223 + +0.8
20,223 + -0.9
20,228 + +0.9
20,228 + -0.3
20,231 - -0.9
20,231 - +1.8
20,231 - -0.5
20,231 - -0.1
20,231 - -1.5
20,231 - +0.7
20,231 - +1.7
20,231 - +0.4
20,231 - -0.3
20,231 - +0.4
20,231 - +1.0
20,231 - -1.4
20,231 - -0.3
20,233 + -0.1
20,236 - -1.1
20,236 - -0.4
20,236 - -0.6
20,241 - -0.1
20,253 - -0.3
20,300 - -0.1
20,302 + -0.5
20,551 + Dshi_4086 0.89 +0.7
20,566 + -0.3
20,566 + +0.1
20,566 + +0.7
20,574 - +1.1
20,585 + +0.7
20,593 - Dshi_4087 0.12 -0.1
20,600 + Dshi_4087 0.14 -0.9
20,640 + Dshi_4087 0.28 +0.0
20,640 + Dshi_4087 0.28 -0.2
20,640 + Dshi_4087 0.28 -0.7
20,677 + Dshi_4087 0.40 +0.1
20,677 + Dshi_4087 0.40 +0.2
20,677 + Dshi_4087 0.40 -0.7
20,678 + Dshi_4087 0.40 +0.5
20,685 + Dshi_4087 0.43 +1.3
20,685 + Dshi_4087 0.43 -0.1
20,685 + Dshi_4087 0.43 -0.1
20,685 + Dshi_4087 0.43 +0.2
20,685 - Dshi_4087 0.43 +1.2
20,685 - Dshi_4087 0.43 -0.5
20,696 - Dshi_4087 0.47 -0.6
20,698 + Dshi_4087 0.47 +1.4
20,698 + Dshi_4087 0.47 +0.9
20,699 - Dshi_4087 0.48 -0.6
20,699 - Dshi_4087 0.48 -0.9
20,700 + Dshi_4087 0.48 +0.9
20,700 + Dshi_4087 0.48 -1.2
20,700 + Dshi_4087 0.48 +0.7
20,700 + Dshi_4087 0.48 +0.3
20,700 + Dshi_4087 0.48 +0.7
20,700 + Dshi_4087 0.48 +1.1
20,706 - Dshi_4087 0.50 +0.6
20,716 - Dshi_4087 0.53 -0.5
20,718 - Dshi_4087 0.54 +0.9
20,718 - Dshi_4087 0.54 +0.3
20,718 - Dshi_4087 0.54 -0.3
20,736 + Dshi_4087 0.60 -1.9
20,736 + Dshi_4087 0.60 +0.5
20,736 + Dshi_4087 0.60 -0.1
20,747 - Dshi_4087 0.64 +0.4
20,762 + Dshi_4087 0.69 -0.9
20,771 + Dshi_4087 0.72 -0.3
20,793 + Dshi_4087 0.80 +0.3
20,801 + Dshi_4087 0.82 -0.7
20,816 - Dshi_4087 0.87 -1.2
20,833 - +0.3
20,870 - -0.5
20,871 + -0.5
20,905 - Dshi_4088 0.12 -2.5
20,945 - Dshi_4088 0.22 -0.6
20,946 + Dshi_4088 0.22 +0.5
20,949 - Dshi_4088 0.23 -0.1
20,951 + Dshi_4088 0.24 +0.3
20,951 + Dshi_4088 0.24 +1.9
20,951 + Dshi_4088 0.24 +0.5
20,951 + Dshi_4088 0.24 -1.4
20,951 + Dshi_4088 0.24 +0.7
20,951 + Dshi_4088 0.24 -1.3
20,952 + Dshi_4088 0.24 +0.4
20,961 + Dshi_4088 0.26 -0.4

Or see this region's nucleotide sequence