Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3648

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3647 and Dshi_3648 are separated by 4 nucleotidesDshi_3648 and Dshi_3649 overlap by 4 nucleotidesDshi_3649 and Dshi_3650 overlap by 4 nucleotidesDshi_3650 and Dshi_3651 are separated by 12 nucleotides Dshi_3647: Dshi_3647 - conjugation TrbI family protein (RefSeq), at 46,205 to 47,584 _3647 Dshi_3648: Dshi_3648 - type II secretion system protein E (RefSeq), at 47,589 to 48,575 _3648 Dshi_3649: Dshi_3649 - hypothetical protein (RefSeq), at 48,572 to 48,766 _3649 Dshi_3650: Dshi_3650 - hypothetical protein (RefSeq), at 48,763 to 49,173 _3650 Dshi_3651: Dshi_3651 - TrbL/VirB6 plasmid conjugal transfer protein (RefSeq), at 49,186 to 50,262 _3651 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1at 46.701 kb on + strand, within Dshi_3647at 46.897 kb on + strand, within Dshi_3647at 46.954 kb on - strand, within Dshi_3647at 47.149 kb on + strand, within Dshi_3647at 47.181 kb on + strand, within Dshi_3647at 47.181 kb on + strand, within Dshi_3647at 47.230 kb on - strand, within Dshi_3647at 47.287 kb on - strand, within Dshi_3647at 47.293 kb on + strand, within Dshi_3647at 47.381 kb on - strand, within Dshi_3647at 47.447 kb on + strandat 47.473 kb on - strandat 47.504 kb on - strandat 47.719 kb on + strand, within Dshi_3648at 47.755 kb on - strand, within Dshi_3648at 47.837 kb on - strand, within Dshi_3648at 47.838 kb on - strand, within Dshi_3648at 47.838 kb on - strand, within Dshi_3648at 47.839 kb on - strand, within Dshi_3648at 47.839 kb on - strand, within Dshi_3648at 47.859 kb on - strand, within Dshi_3648at 48.008 kb on + strand, within Dshi_3648at 48.130 kb on + strand, within Dshi_3648at 48.138 kb on - strand, within Dshi_3648at 48.168 kb on - strand, within Dshi_3648at 48.178 kb on + strand, within Dshi_3648at 48.178 kb on + strand, within Dshi_3648at 48.186 kb on - strand, within Dshi_3648at 48.194 kb on + strand, within Dshi_3648at 48.202 kb on + strand, within Dshi_3648at 48.202 kb on - strand, within Dshi_3648at 48.210 kb on - strand, within Dshi_3648at 48.267 kb on - strand, within Dshi_3648at 48.317 kb on + strand, within Dshi_3648at 48.318 kb on + strand, within Dshi_3648at 48.351 kb on - strand, within Dshi_3648at 48.367 kb on - strand, within Dshi_3648at 48.385 kb on + strand, within Dshi_3648at 48.387 kb on + strand, within Dshi_3648at 48.407 kb on - strand, within Dshi_3648at 48.456 kb on - strand, within Dshi_3648at 48.555 kb on - strandat 48.605 kb on + strand, within Dshi_3649at 48.638 kb on - strand, within Dshi_3649at 48.643 kb on - strand, within Dshi_3649at 48.652 kb on - strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.669 kb on + strand, within Dshi_3649at 48.685 kb on + strand, within Dshi_3649at 48.720 kb on + strand, within Dshi_3649at 48.748 kb on - strandat 48.768 kb on - strandat 48.769 kb on - strandat 48.780 kb on - strandat 48.939 kb on + strand, within Dshi_3650at 48.954 kb on + strand, within Dshi_3650at 49.020 kb on - strand, within Dshi_3650at 49.039 kb on - strand, within Dshi_3650at 49.042 kb on - strand, within Dshi_3650at 49.103 kb on + strand, within Dshi_3650at 49.181 kb on - strandat 49.221 kb on + strandat 49.222 kb on - strandat 49.223 kb on - strandat 49.233 kb on - strandat 49.235 kb on - strandat 49.248 kb on - strandat 49.288 kb on - strandat 49.295 kb on + strand, within Dshi_3651at 49.425 kb on + strand, within Dshi_3651at 49.452 kb on + strand, within Dshi_3651at 49.486 kb on + strand, within Dshi_3651at 49.488 kb on - strand, within Dshi_3651at 49.513 kb on - strand, within Dshi_3651at 49.513 kb on - strand, within Dshi_3651

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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46,701 + Dshi_3647 0.36 -0.8
46,897 + Dshi_3647 0.50 -0.2
46,954 - Dshi_3647 0.54 +0.2
47,149 + Dshi_3647 0.68 +0.1
47,181 + Dshi_3647 0.71 -0.6
47,181 + Dshi_3647 0.71 -0.6
47,230 - Dshi_3647 0.74 -1.3
47,287 - Dshi_3647 0.78 +1.2
47,293 + Dshi_3647 0.79 -0.3
47,381 - Dshi_3647 0.85 +0.0
47,447 + +0.8
47,473 - +0.9
47,504 - -0.2
47,719 + Dshi_3648 0.13 +0.1
47,755 - Dshi_3648 0.17 -0.1
47,837 - Dshi_3648 0.25 -0.2
47,838 - Dshi_3648 0.25 +0.9
47,838 - Dshi_3648 0.25 -0.1
47,839 - Dshi_3648 0.25 -0.1
47,839 - Dshi_3648 0.25 +0.5
47,859 - Dshi_3648 0.27 -0.5
48,008 + Dshi_3648 0.42 +0.6
48,130 + Dshi_3648 0.55 +0.0
48,138 - Dshi_3648 0.56 +0.2
48,168 - Dshi_3648 0.59 +0.1
48,178 + Dshi_3648 0.60 +0.0
48,178 + Dshi_3648 0.60 -0.8
48,186 - Dshi_3648 0.60 +0.7
48,194 + Dshi_3648 0.61 +0.1
48,202 + Dshi_3648 0.62 -0.5
48,202 - Dshi_3648 0.62 +0.4
48,210 - Dshi_3648 0.63 +0.1
48,267 - Dshi_3648 0.69 +0.1
48,317 + Dshi_3648 0.74 -1.1
48,318 + Dshi_3648 0.74 +0.2
48,351 - Dshi_3648 0.77 -1.1
48,367 - Dshi_3648 0.79 +0.3
48,385 + Dshi_3648 0.81 +0.0
48,387 + Dshi_3648 0.81 +0.6
48,407 - Dshi_3648 0.83 +0.4
48,456 - Dshi_3648 0.88 +0.1
48,555 - -0.1
48,605 + Dshi_3649 0.17 -0.8
48,638 - Dshi_3649 0.34 -2.1
48,643 - Dshi_3649 0.36 -0.3
48,652 - Dshi_3649 0.41 +0.9
48,669 + Dshi_3649 0.50 +1.5
48,669 + Dshi_3649 0.50 +0.3
48,669 + Dshi_3649 0.50 +0.3
48,669 + Dshi_3649 0.50 -0.1
48,669 + Dshi_3649 0.50 -1.4
48,669 + Dshi_3649 0.50 +0.6
48,669 + Dshi_3649 0.50 -0.8
48,685 + Dshi_3649 0.58 +0.9
48,720 + Dshi_3649 0.76 +0.2
48,748 - +0.5
48,768 - -1.2
48,769 - +0.5
48,780 - -0.1
48,939 + Dshi_3650 0.43 +1.0
48,954 + Dshi_3650 0.46 +1.1
49,020 - Dshi_3650 0.63 -1.0
49,039 - Dshi_3650 0.67 +0.5
49,042 - Dshi_3650 0.68 +0.1
49,103 + Dshi_3650 0.83 +0.9
49,181 - +0.3
49,221 + +0.8
49,222 - +0.3
49,223 - +1.3
49,233 - -0.4
49,235 - -0.4
49,248 - +1.7
49,288 - +0.8
49,295 + Dshi_3651 0.10 -0.8
49,425 + Dshi_3651 0.22 -0.4
49,452 + Dshi_3651 0.25 -0.6
49,486 + Dshi_3651 0.28 +0.1
49,488 - Dshi_3651 0.28 -0.5
49,513 - Dshi_3651 0.30 +0.9
49,513 - Dshi_3651 0.30 +0.1

Or see this region's nucleotide sequence