Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3420

Experiment: m.b. benzoic 0.16 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. benzoic 0.16 mg/ml
3,598,375	-		Dshi_3419	0.30	+0.4
3,598,420	-		Dshi_3419	0.33	-0.5
3,598,471	-		Dshi_3419	0.37	+0.2
3,598,581	+		Dshi_3419	0.45	-0.0
3,598,625	+		Dshi_3419	0.48	+1.0
3,598,630	+		Dshi_3419	0.49	+1.0
3,598,671	+		Dshi_3419	0.52	-0.2
3,598,679	-		Dshi_3419	0.53	-0.6
3,598,688	+		Dshi_3419	0.53	-0.7
3,598,688	+		Dshi_3419	0.53	-0.8
3,598,909	-		Dshi_3419	0.70	-1.0
3,599,059	-		Dshi_3419	0.81	-0.6
3,599,088	-		Dshi_3419	0.83	-0.3
3,599,096	+		Dshi_3419	0.84	-0.5
3,599,101	+		Dshi_3419	0.84	+0.5
3,599,116	-		Dshi_3419	0.86	-0.3
3,599,159	+		Dshi_3419	0.89	+0.3
3,599,168	-		Dshi_3419	0.89	-0.5
3,599,231	+				-0.2
3,599,232	-				-1.2
3,599,239	-				-1.5
3,599,246	+				-0.0
3,599,249	-				-0.0
3,599,311	-				-0.3
3,599,319	-				-0.0
3,599,350	+				-2.0
3,599,358	-				+1.0
3,599,358	-				+1.3
3,599,358	-				-0.7
3,599,398	-				-0.2
3,599,419	-				-1.2
3,599,425	-				+0.1
3,599,430	-				+0.4
3,599,434	-				-0.6
3,599,443	+				-0.0
3,599,458	-				-2.2
3,599,463	-				+0.5
3,599,467	+				-0.9
3,599,467	+				-0.2
3,599,516	-				-1.0
3,599,523	+		Dshi_3420	0.10	-1.2
3,599,538	+		Dshi_3420	0.11	-0.0
3,599,538	+		Dshi_3420	0.11	-1.3
3,599,567	-		Dshi_3420	0.13	-0.6
3,599,577	-		Dshi_3420	0.14	-2.6
3,599,586	+		Dshi_3420	0.14	-0.0
3,599,595	+		Dshi_3420	0.15	-1.0
3,599,606	+		Dshi_3420	0.15	+1.0
3,599,614	-		Dshi_3420	0.16	-1.3
3,599,713	+		Dshi_3420	0.22	-1.7
3,599,731	+		Dshi_3420	0.23	-0.6
3,599,752	+		Dshi_3420	0.25	-2.4
3,599,752	+		Dshi_3420	0.25	+0.2
3,599,752	-		Dshi_3420	0.25	-1.7
3,599,777	+		Dshi_3420	0.26	-1.2
3,599,780	-		Dshi_3420	0.27	-0.4
3,599,824	+		Dshi_3420	0.29	-0.0
3,599,864	+		Dshi_3420	0.32	-1.6
3,599,876	-		Dshi_3420	0.33	-1.8
3,599,967	-		Dshi_3420	0.39	-0.2
3,600,036	-		Dshi_3420	0.43	-1.2
3,600,105	+		Dshi_3420	0.47	-1.7
3,600,105	-		Dshi_3420	0.47	-1.2
3,600,110	+		Dshi_3420	0.48	-1.1
3,600,126	-		Dshi_3420	0.49	-3.5
3,600,133	+		Dshi_3420	0.49	-1.2
3,600,141	-		Dshi_3420	0.50	-1.2
3,600,178	+		Dshi_3420	0.52	-0.6
3,600,178	+		Dshi_3420	0.52	-1.8
3,600,178	+		Dshi_3420	0.52	-0.8
3,600,181	-		Dshi_3420	0.52	-2.0
3,600,191	-		Dshi_3420	0.53	-1.3
3,600,191	-		Dshi_3420	0.53	-2.0
3,600,196	-		Dshi_3420	0.53	-0.3
3,600,407	+		Dshi_3420	0.67	-1.8
3,600,434	+		Dshi_3420	0.69	-1.0
3,600,463	+		Dshi_3420	0.70	-1.0
3,600,471	-		Dshi_3420	0.71	-1.2
3,600,473	+		Dshi_3420	0.71	+0.2
3,600,473	+		Dshi_3420	0.71	-1.5
3,600,473	+		Dshi_3420	0.71	-0.0
3,600,514	+		Dshi_3420	0.74	-1.0
3,600,522	-		Dshi_3420	0.74	-2.0
3,600,557	-		Dshi_3420	0.76	-0.0
3,600,595	-		Dshi_3420	0.79	-1.4
3,600,620	+		Dshi_3420	0.80	+0.5
3,600,678	+		Dshi_3420	0.84	+0.7
3,600,819	+				+1.5
3,600,827	-				-1.0
3,600,894	-				-0.0
3,600,953	+				-0.2
3,600,967	+				-0.6
3,600,967	-				-2.0
3,600,975	-				+0.1
3,600,975	-				-0.3
3,600,975	-				-0.8
3,601,005	+				-0.0
3,601,007	+				-0.3
3,601,013	-				-0.6
3,601,015	+				+0.4
3,601,015	-				+0.1
3,601,023	-				+0.8
3,601,023	-				+0.1
3,601,026	+				+0.2
3,601,033	+				+0.5
3,601,034	-				-0.3
3,601,034	-				-1.0
3,601,034	-				+0.4
3,601,034	-				+0.8
3,601,041	-				-0.0
3,601,041	-				-0.4
3,601,060	+				-0.9
3,601,060	+				-0.0
3,601,060	+				+1.5
3,601,068	-				+3.4
3,601,075	-				+0.2
3,601,094	-				-0.6
3,601,094	-				-0.3
3,601,110	-				+0.6
3,601,130	+				-0.6
3,601,137	+				-1.3
3,601,138	-				+0.0
3,601,145	-				-1.6
3,601,147	-				+0.7
3,601,153	+				+1.3
3,601,161	-				+0.3
3,601,239	+				+0.5
3,601,239	+				-0.9
3,601,244	+				-0.0
3,601,252	-				-1.0
3,601,257	-				-2.2
3,601,277	+				+0.5
3,601,304	-				+2.4
3,601,312	+				+0.9
3,601,325	+				-1.3
3,601,333	-				+0.5
3,601,356	-				-0.5
3,601,375	-				+0.3
3,601,399	-				-0.4
3,601,405	+				-0.7
3,601,412	+				+1.0
3,601,412	+				-1.0
3,601,419	-				-0.6
3,601,420	-				+1.1
3,601,430	-				-0.2
3,601,460	-				-0.6
3,601,480	+				-0.7
3,601,488	-				+0.4
3,601,488	-				-0.0
3,601,488	-				+0.4
3,601,526	+				-0.4
3,601,534	-				-0.6
3,601,536	-				-0.5
3,601,539	-				-0.9
3,601,568	+				-0.1
3,601,568	+				-0.5
3,601,576	-				+3.0
3,601,578	+				+1.0
3,601,578	+				-0.8
3,601,586	-				+0.1
3,601,586	-				+0.5
3,601,591	-				-0.0
3,601,647	+				-0.0
3,601,673	+		Dshi_3421	0.11	+0.1
3,601,673	+		Dshi_3421	0.11	-0.2
3,601,681	-		Dshi_3421	0.11	+0.8
3,601,709	+		Dshi_3421	0.13	-2.4
3,601,734	-		Dshi_3421	0.15	-0.4
3,601,747	+		Dshi_3421	0.16	-0.2
3,601,912	-		Dshi_3421	0.27	-0.4