Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3122

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3121 and Dshi_3122 are separated by 3 nucleotidesDshi_3122 and Dshi_3123 are separated by 80 nucleotides Dshi_3121: Dshi_3121 - Tricarboxylate transport membrane protein TctA (from data), at 3,288,269 to 3,289,786 _3121 Dshi_3122: Dshi_3122 - Tricarboxylate transport protein TctB (from data), at 3,289,790 to 3,290,278 _3122 Dshi_3123: Dshi_3123 - Tricarboxylate transport protein TctC (from data), at 3,290,359 to 3,291,339 _3123 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -1 0 1at 3288.835 kb on + strand, within Dshi_3121at 3288.847 kb on - strand, within Dshi_3121at 3288.863 kb on + strand, within Dshi_3121at 3288.886 kb on - strand, within Dshi_3121at 3288.953 kb on + strand, within Dshi_3121at 3288.958 kb on + strand, within Dshi_3121at 3288.970 kb on + strand, within Dshi_3121at 3289.009 kb on - strand, within Dshi_3121at 3289.085 kb on + strand, within Dshi_3121at 3289.093 kb on - strand, within Dshi_3121at 3289.132 kb on - strand, within Dshi_3121at 3289.236 kb on - strand, within Dshi_3121at 3289.377 kb on + strand, within Dshi_3121at 3289.385 kb on - strand, within Dshi_3121at 3289.392 kb on - strand, within Dshi_3121at 3289.529 kb on - strand, within Dshi_3121at 3289.766 kb on + strandat 3289.784 kb on - strandat 3289.784 kb on - strandat 3289.803 kb on + strandat 3289.904 kb on - strand, within Dshi_3122at 3289.940 kb on + strand, within Dshi_3122at 3289.993 kb on + strand, within Dshi_3122at 3290.212 kb on + strand, within Dshi_3122at 3290.233 kb on + strandat 3290.254 kb on + strandat 3290.278 kb on + strandat 3290.286 kb on - strandat 3290.337 kb on + strandat 3290.345 kb on - strandat 3290.548 kb on + strand, within Dshi_3123at 3290.584 kb on + strand, within Dshi_3123at 3290.663 kb on + strand, within Dshi_3123at 3290.663 kb on + strand, within Dshi_3123at 3290.747 kb on + strand, within Dshi_3123at 3290.814 kb on + strand, within Dshi_3123at 3291.042 kb on + strand, within Dshi_3123at 3291.161 kb on + strand, within Dshi_3123at 3291.174 kb on - strand, within Dshi_3123at 3291.202 kb on - strand, within Dshi_3123

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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3,288,835 + Dshi_3121 0.37 -0.7
3,288,847 - Dshi_3121 0.38 -1.0
3,288,863 + Dshi_3121 0.39 -0.9
3,288,886 - Dshi_3121 0.41 -0.5
3,288,953 + Dshi_3121 0.45 -0.6
3,288,958 + Dshi_3121 0.45 -0.3
3,288,970 + Dshi_3121 0.46 +0.5
3,289,009 - Dshi_3121 0.49 -0.0
3,289,085 + Dshi_3121 0.54 -0.4
3,289,093 - Dshi_3121 0.54 -0.6
3,289,132 - Dshi_3121 0.57 -0.4
3,289,236 - Dshi_3121 0.64 +1.1
3,289,377 + Dshi_3121 0.73 -0.7
3,289,385 - Dshi_3121 0.74 -0.9
3,289,392 - Dshi_3121 0.74 +1.0
3,289,529 - Dshi_3121 0.83 -0.9
3,289,766 + -0.8
3,289,784 - +0.3
3,289,784 - +0.2
3,289,803 + -0.0
3,289,904 - Dshi_3122 0.23 -1.2
3,289,940 + Dshi_3122 0.31 -0.2
3,289,993 + Dshi_3122 0.42 -0.0
3,290,212 + Dshi_3122 0.86 -0.8
3,290,233 + -0.8
3,290,254 + -0.0
3,290,278 + -0.6
3,290,286 - -0.8
3,290,337 + -1.5
3,290,345 - -1.5
3,290,548 + Dshi_3123 0.19 +0.7
3,290,584 + Dshi_3123 0.23 +0.5
3,290,663 + Dshi_3123 0.31 -0.0
3,290,663 + Dshi_3123 0.31 +0.1
3,290,747 + Dshi_3123 0.40 +1.1
3,290,814 + Dshi_3123 0.46 -0.7
3,291,042 + Dshi_3123 0.70 +0.8
3,291,161 + Dshi_3123 0.82 +0.3
3,291,174 - Dshi_3123 0.83 +0.7
3,291,202 - Dshi_3123 0.86 -1.0

Or see this region's nucleotide sequence