Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3095 and Dshi_3096 are separated by 2 nucleotides Dshi_3096 and Dshi_3097 are separated by 16 nucleotides Dshi_3097 and Dshi_3098 are separated by 35 nucleotides Dshi_3098 and Dshi_3099 overlap by 4 nucleotides
Dshi_3095: Dshi_3095 - protein of unknown function DUF205 (RefSeq), at 3,263,379 to 3,263,990
_3095
Dshi_3096: Dshi_3096 - protein of unknown function DUF805 (RefSeq), at 3,263,993 to 3,264,499
_3096
Dshi_3097: Dshi_3097 - glutamate--cysteine ligase (RefSeq), at 3,264,516 to 3,265,886
_3097
Dshi_3098: Dshi_3098 - hypothetical protein (RefSeq), at 3,265,922 to 3,266,470
_3098
Dshi_3099: Dshi_3099 - protein of unknown function DUF558 (RefSeq), at 3,266,467 to 3,267,216
_3099
Position (kb)
3264
3265
3266 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3263.998 kb on - strand at 3264.004 kb on - strand at 3264.530 kb on - strand at 3264.825 kb on - strand, within Dshi_3097 at 3265.898 kb on - strand at 3266.332 kb on - strand, within Dshi_3098 at 3266.332 kb on - strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.401 kb on + strand, within Dshi_3098 at 3266.409 kb on - strand, within Dshi_3098 at 3266.506 kb on - strand at 3266.572 kb on - strand, within Dshi_3099 at 3266.711 kb on + strand, within Dshi_3099
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 3,263,998 - +0.5 3,264,004 - -2.0 3,264,530 - -1.0 3,264,825 - Dshi_3097 0.23 -0.8 3,265,898 - +1.0 3,266,332 - Dshi_3098 0.75 -0.0 3,266,332 - Dshi_3098 0.75 +0.4 3,266,401 + Dshi_3098 0.87 +0.1 3,266,401 + Dshi_3098 0.87 +0.3 3,266,401 + Dshi_3098 0.87 +1.8 3,266,409 - Dshi_3098 0.89 +0.2 3,266,506 - +0.3 3,266,572 - Dshi_3099 0.14 -0.9 3,266,711 + Dshi_3099 0.33 -0.0
Or see this region's nucleotide sequence