Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3068
Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,235,855 | + | Dshi_3067 | 0.11 | +2.3 | |
3,235,863 | - | Dshi_3067 | 0.12 | +2.0 | |
3,235,930 | - | Dshi_3067 | 0.21 | +2.1 | |
3,236,036 | - | Dshi_3067 | 0.36 | +0.7 | |
3,236,065 | - | Dshi_3067 | 0.40 | +0.8 | |
3,236,134 | - | Dshi_3067 | 0.49 | +1.8 | |
3,236,238 | + | Dshi_3067 | 0.63 | +2.7 | |
3,236,526 | - | +0.3 | |||
3,236,645 | + | +0.8 | |||
3,237,023 | + | Dshi_3068 | 0.23 | -0.0 | |
3,237,132 | + | Dshi_3068 | 0.35 | +0.5 | |
3,237,140 | - | Dshi_3068 | 0.35 | +0.2 | |
3,237,201 | - | Dshi_3068 | 0.42 | +0.8 | |
3,237,532 | + | Dshi_3068 | 0.77 | +0.7 | |
3,237,598 | - | Dshi_3068 | 0.84 | -0.2 | |
3,237,661 | - | +1.5 | |||
3,237,755 | - | -0.3 | |||
3,237,785 | - | +0.4 | |||
3,237,827 | + | +1.0 | |||
3,237,901 | + | Dshi_3069 | 0.54 | +1.5 | |
3,237,939 | + | Dshi_3069 | 0.76 | +1.5 | |
3,238,014 | + | +0.2 | |||
3,238,409 | + | Dshi_3070 | 0.43 | +0.8 | |
3,238,435 | - | Dshi_3070 | 0.47 | -0.0 | |
3,238,454 | + | Dshi_3070 | 0.49 | +1.0 | |
3,238,459 | + | Dshi_3070 | 0.50 | -0.0 | |
3,238,494 | - | Dshi_3070 | 0.54 | -0.0 | |
3,238,655 | + | Dshi_3070 | 0.75 | -0.8 | |
3,238,655 | + | Dshi_3070 | 0.75 | +1.0 | |
3,238,748 | + | Dshi_3070 | 0.87 | -0.0 |
Or see this region's nucleotide sequence