Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3045 and Dshi_3046 are separated by 3 nucleotides Dshi_3046 and Dshi_3047 overlap by 4 nucleotides
Dshi_3045: Dshi_3045 - glycosyl transferase family 2 (RefSeq), at 3,213,310 to 3,214,326
_3045
Dshi_3046: Dshi_3046 - Hydroxypyruvate reductase (RefSeq), at 3,214,330 to 3,215,577
_3046
Dshi_3047: Dshi_3047 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 3,215,574 to 3,216,458
_3047
Position (kb)
3214
3215
3216 Strain fitness (log2 ratio)
-1
0
1 at 3213.334 kb on - strand at 3213.455 kb on + strand, within Dshi_3045 at 3213.456 kb on + strand, within Dshi_3045 at 3213.505 kb on + strand, within Dshi_3045 at 3213.545 kb on - strand, within Dshi_3045 at 3213.571 kb on - strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3214.076 kb on - strand, within Dshi_3045 at 3214.087 kb on - strand, within Dshi_3045 at 3214.186 kb on + strand, within Dshi_3045 at 3214.347 kb on - strand at 3214.347 kb on - strand at 3214.450 kb on - strand at 3214.559 kb on - strand, within Dshi_3046 at 3214.892 kb on + strand, within Dshi_3046 at 3215.072 kb on - strand, within Dshi_3046 at 3215.332 kb on - strand, within Dshi_3046 at 3215.389 kb on + strand, within Dshi_3046 at 3215.534 kb on + strand at 3215.615 kb on + strand at 3215.615 kb on + strand at 3215.623 kb on - strand at 3215.623 kb on - strand at 3215.707 kb on + strand, within Dshi_3047 at 3215.707 kb on + strand, within Dshi_3047 at 3215.715 kb on - strand, within Dshi_3047 at 3215.981 kb on - strand, within Dshi_3047 at 3215.988 kb on - strand, within Dshi_3047 at 3216.020 kb on + strand, within Dshi_3047 at 3216.181 kb on + strand, within Dshi_3047 at 3216.311 kb on + strand, within Dshi_3047 at 3216.366 kb on + strand, within Dshi_3047 at 3216.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 3,213,334 - -0.8 3,213,455 + Dshi_3045 0.14 +0.3 3,213,456 + Dshi_3045 0.14 +1.5 3,213,505 + Dshi_3045 0.19 +0.4 3,213,545 - Dshi_3045 0.23 -0.6 3,213,571 - Dshi_3045 0.26 -0.2 3,213,911 + Dshi_3045 0.59 -1.2 3,213,911 + Dshi_3045 0.59 -1.2 3,214,076 - Dshi_3045 0.75 -0.3 3,214,087 - Dshi_3045 0.76 -0.4 3,214,186 + Dshi_3045 0.86 -0.8 3,214,347 - +0.2 3,214,347 - +0.8 3,214,450 - -0.6 3,214,559 - Dshi_3046 0.18 -0.0 3,214,892 + Dshi_3046 0.45 +0.9 3,215,072 - Dshi_3046 0.59 +1.3 3,215,332 - Dshi_3046 0.80 +1.1 3,215,389 + Dshi_3046 0.85 +0.0 3,215,534 + -0.5 3,215,615 + +0.4 3,215,615 + -0.0 3,215,623 - +0.3 3,215,623 - -0.7 3,215,707 + Dshi_3047 0.15 -0.3 3,215,707 + Dshi_3047 0.15 -0.3 3,215,715 - Dshi_3047 0.16 +0.3 3,215,981 - Dshi_3047 0.46 +0.2 3,215,988 - Dshi_3047 0.47 +0.2 3,216,020 + Dshi_3047 0.50 -1.1 3,216,181 + Dshi_3047 0.69 +0.3 3,216,311 + Dshi_3047 0.83 +0.4 3,216,366 + Dshi_3047 0.89 +0.3 3,216,428 + -0.9
Or see this region's nucleotide sequence