Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2927 and Dshi_2928 overlap by 4 nucleotides Dshi_2928 and Dshi_2929 overlap by 34 nucleotides Dshi_2929 and Dshi_2930 overlap by 1 nucleotides Dshi_2930 and Dshi_2931 are separated by 134 nucleotides
Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475
_2927
Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963
_2928
Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763
_2929
Dshi_2930: Dshi_2930 - DSBA oxidoreductase (RefSeq), at 3,087,763 to 3,088,362
_2930
Dshi_2931: Dshi_2931 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,088,497 to 3,089,519
_2931
Position (kb)
3086
3087
3088 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3086.634 kb on - strand, within Dshi_2928 at 3086.645 kb on - strand, within Dshi_2928 at 3086.965 kb on - strand at 3087.011 kb on + strand at 3087.019 kb on - strand, within Dshi_2929 at 3087.019 kb on - strand, within Dshi_2929 at 3087.057 kb on - strand, within Dshi_2929 at 3087.135 kb on - strand, within Dshi_2929 at 3087.321 kb on - strand, within Dshi_2929 at 3087.432 kb on - strand, within Dshi_2929 at 3087.669 kb on + strand, within Dshi_2929 at 3087.731 kb on + strand at 3087.786 kb on + strand at 3087.838 kb on - strand, within Dshi_2930 at 3087.900 kb on + strand, within Dshi_2930 at 3087.988 kb on - strand, within Dshi_2930 at 3088.107 kb on + strand, within Dshi_2930 at 3088.115 kb on - strand, within Dshi_2930 at 3088.126 kb on - strand, within Dshi_2930 at 3088.182 kb on - strand, within Dshi_2930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 3,086,634 - Dshi_2928 0.33 -0.1 3,086,645 - Dshi_2928 0.35 +0.8 3,086,965 - -1.5 3,087,011 + +0.7 3,087,019 - Dshi_2929 0.11 -0.3 3,087,019 - Dshi_2929 0.11 -1.0 3,087,057 - Dshi_2929 0.15 -1.0 3,087,135 - Dshi_2929 0.25 -0.6 3,087,321 - Dshi_2929 0.47 -0.6 3,087,432 - Dshi_2929 0.60 -0.5 3,087,669 + Dshi_2929 0.89 -0.7 3,087,731 + -1.1 3,087,786 + +1.2 3,087,838 - Dshi_2930 0.12 -2.9 3,087,900 + Dshi_2930 0.23 -1.4 3,087,988 - Dshi_2930 0.38 +0.2 3,088,107 + Dshi_2930 0.57 -0.6 3,088,115 - Dshi_2930 0.59 +1.5 3,088,126 - Dshi_2930 0.60 -0.1 3,088,182 - Dshi_2930 0.70 +0.8
Or see this region's nucleotide sequence