Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2789
Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,947,201 | + | Dshi_2787 | 0.87 | +0.3 | |
2,947,231 | - | -0.2 | |||
2,947,243 | - | +1.0 | |||
2,947,312 | - | -0.2 | |||
2,947,351 | + | -0.1 | |||
2,947,478 | - | Dshi_2788 | 0.20 | +0.4 | |
2,947,494 | - | Dshi_2788 | 0.23 | -1.7 | |
2,947,621 | - | Dshi_2788 | 0.41 | +0.9 | |
2,947,702 | - | Dshi_2788 | 0.53 | +0.7 | |
2,947,884 | + | Dshi_2788 | 0.79 | +0.1 | |
2,947,926 | + | Dshi_2788 | 0.85 | -0.1 | |
2,947,933 | + | Dshi_2788 | 0.86 | +1.9 | |
2,947,946 | + | Dshi_2788 | 0.88 | +0.7 | |
2,947,984 | + | -0.3 | |||
2,947,997 | - | -0.8 | |||
2,948,013 | - | +0.4 | |||
2,948,017 | + | +0.5 | |||
2,948,024 | + | +0.2 | |||
2,948,060 | + | +0.1 | |||
2,949,046 | - | Dshi_2790 | 0.32 | +0.7 | |
2,949,175 | - | Dshi_2790 | 0.45 | +0.2 | |
2,949,292 | + | Dshi_2790 | 0.57 | -0.1 | |
2,949,292 | + | Dshi_2790 | 0.57 | -0.5 | |
2,949,334 | + | Dshi_2790 | 0.62 | -1.0 | |
2,949,379 | + | Dshi_2790 | 0.66 | +0.1 | |
2,949,387 | - | Dshi_2790 | 0.67 | -0.7 | |
2,949,497 | + | Dshi_2790 | 0.79 | -0.1 | |
2,949,532 | + | Dshi_2790 | 0.82 | -1.0 | |
2,949,540 | - | Dshi_2790 | 0.83 | -0.3 | |
2,949,544 | + | Dshi_2790 | 0.83 | -0.9 | |
2,949,605 | + | Dshi_2790 | 0.90 | +0.1 |
Or see this region's nucleotide sequence