Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2720
Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,881,333 | + | -0.9 | |||
2,881,352 | + | -0.2 | |||
2,881,393 | - | +0.9 | |||
2,881,566 | - | Dshi_2720 | 0.10 | -1.1 | |
2,881,709 | - | Dshi_2720 | 0.23 | -1.1 | |
2,881,720 | - | Dshi_2720 | 0.24 | -0.0 | |
2,881,932 | + | Dshi_2720 | 0.43 | +0.3 | |
2,882,044 | - | Dshi_2720 | 0.53 | -1.6 | |
2,882,160 | + | Dshi_2720 | 0.63 | -0.6 | |
2,882,169 | - | Dshi_2720 | 0.64 | +1.3 | |
2,882,341 | + | Dshi_2720 | 0.79 | -0.6 | |
2,882,360 | + | Dshi_2720 | 0.81 | -0.1 | |
2,882,446 | + | Dshi_2720 | 0.88 | +0.6 | |
2,882,488 | + | -0.1 | |||
2,882,527 | + | -2.1 | |||
2,882,625 | + | -0.5 | |||
2,882,630 | + | -0.2 | |||
2,882,741 | + | -0.8 | |||
2,882,768 | - | -0.1 | |||
2,882,884 | + | Dshi_2721 | 0.13 | +0.3 | |
2,883,058 | - | Dshi_2721 | 0.22 | -0.1 | |
2,883,074 | - | Dshi_2721 | 0.23 | -1.3 | |
2,883,357 | + | Dshi_2721 | 0.38 | -0.7 | |
2,883,390 | - | Dshi_2721 | 0.40 | -0.3 | |
2,883,429 | - | Dshi_2721 | 0.42 | -1.9 | |
2,883,511 | + | Dshi_2721 | 0.46 | -0.7 | |
2,883,572 | + | Dshi_2721 | 0.50 | -1.7 |
Or see this region's nucleotide sequence