Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1721 and Dshi_1722 are separated by 39 nucleotides Dshi_1722 and Dshi_R0031 are separated by 85 nucleotides Dshi_R0031 and Dshi_1723 are separated by 59 nucleotides Dshi_1723 and Dshi_1724 are separated by 343 nucleotides
Dshi_1721: Dshi_1721 - integration host factor, alpha subunit (RefSeq), at 1,788,324 to 1,788,629
_1721
Dshi_1722: Dshi_1722 - transcriptional regulator, MerR family (RefSeq), at 1,788,669 to 1,789,406
_1722
Dshi_R0031: Dshi_R0031 - tRNA-Pro (RefSeq), at 1,789,492 to 1,789,568
_R0031
Dshi_1723: Dshi_1723 - 2-deoxycytidine 5-triphosphate deaminase (RefSeq), at 1,789,628 to 1,790,722
_1723
Dshi_1724: Dshi_1724 - segregation and condensation protein B (RefSeq), at 1,791,066 to 1,791,755
_1724
Position (kb)
1789
1790
1791 Strain fitness (log2 ratio)
-2
-1
0
1 at 1788.778 kb on - strand, within Dshi_1722 at 1789.177 kb on + strand, within Dshi_1722 at 1789.704 kb on - strand at 1789.872 kb on - strand, within Dshi_1723 at 1790.087 kb on + strand, within Dshi_1723 at 1790.417 kb on + strand, within Dshi_1723 at 1790.650 kb on + strand at 1790.691 kb on + strand at 1790.834 kb on - strand at 1790.944 kb on + strand at 1791.022 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 1,788,778 - Dshi_1722 0.15 -0.5 1,789,177 + Dshi_1722 0.69 +0.1 1,789,704 - +0.0 1,789,872 - Dshi_1723 0.22 -0.8 1,790,087 + Dshi_1723 0.42 +0.4 1,790,417 + Dshi_1723 0.72 -1.9 1,790,650 + -1.3 1,790,691 + -1.2 1,790,834 - -0.4 1,790,944 + +0.3 1,791,022 + -0.1
Or see this region's nucleotide sequence