Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1096

Experiment: m.b. benzoic 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1095 and Dshi_1096 are separated by 56 nucleotidesDshi_1096 and Dshi_1097 are separated by 145 nucleotides Dshi_1095: Dshi_1095 - aldehyde dehydrogenase (RefSeq), at 1,122,494 to 1,124,014 _1095 Dshi_1096: Dshi_1096 - lipolytic enzyme, G-D-S-L (RefSeq), at 1,124,071 to 1,124,751 _1096 Dshi_1097: Dshi_1097 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 1,124,897 to 1,125,964 _1097 Position (kb) 1124 1125Strain fitness (log2 ratio) -1 0 1 2at 1123.088 kb on + strand, within Dshi_1095at 1123.127 kb on + strand, within Dshi_1095at 1123.182 kb on - strand, within Dshi_1095at 1123.211 kb on - strand, within Dshi_1095at 1123.323 kb on - strand, within Dshi_1095at 1123.335 kb on - strand, within Dshi_1095at 1123.398 kb on - strand, within Dshi_1095at 1123.398 kb on - strand, within Dshi_1095at 1123.465 kb on + strand, within Dshi_1095at 1123.475 kb on + strand, within Dshi_1095at 1123.478 kb on + strand, within Dshi_1095at 1123.678 kb on + strand, within Dshi_1095at 1123.740 kb on + strand, within Dshi_1095at 1123.785 kb on + strand, within Dshi_1095at 1123.933 kb on + strandat 1123.978 kb on + strandat 1124.042 kb on + strandat 1124.215 kb on - strand, within Dshi_1096at 1124.221 kb on + strand, within Dshi_1096at 1124.353 kb on - strand, within Dshi_1096at 1124.380 kb on + strand, within Dshi_1096at 1124.414 kb on - strand, within Dshi_1096at 1124.498 kb on + strand, within Dshi_1096at 1124.498 kb on - strand, within Dshi_1096at 1124.527 kb on + strand, within Dshi_1096at 1124.616 kb on - strand, within Dshi_1096at 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.694 kb on + strandat 1124.702 kb on - strandat 1124.704 kb on + strandat 1124.704 kb on + strandat 1124.884 kb on + strandat 1124.950 kb on + strandat 1124.980 kb on - strandat 1124.982 kb on + strandat 1124.985 kb on - strandat 1125.020 kb on - strand, within Dshi_1097at 1125.250 kb on + strand, within Dshi_1097at 1125.316 kb on - strand, within Dshi_1097at 1125.386 kb on - strand, within Dshi_1097at 1125.464 kb on + strand, within Dshi_1097at 1125.484 kb on + strand, within Dshi_1097at 1125.604 kb on - strand, within Dshi_1097at 1125.731 kb on - strand, within Dshi_1097at 1125.751 kb on - strand, within Dshi_1097

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml
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1,123,088 + Dshi_1095 0.39 +0.1
1,123,127 + Dshi_1095 0.42 -1.1
1,123,182 - Dshi_1095 0.45 +0.5
1,123,211 - Dshi_1095 0.47 +1.4
1,123,323 - Dshi_1095 0.55 -0.2
1,123,335 - Dshi_1095 0.55 -0.2
1,123,398 - Dshi_1095 0.59 -0.2
1,123,398 - Dshi_1095 0.59 +0.7
1,123,465 + Dshi_1095 0.64 +0.5
1,123,475 + Dshi_1095 0.64 +0.0
1,123,478 + Dshi_1095 0.65 +0.4
1,123,678 + Dshi_1095 0.78 +1.0
1,123,740 + Dshi_1095 0.82 -0.8
1,123,785 + Dshi_1095 0.85 -0.3
1,123,933 + +0.0
1,123,978 + -0.7
1,124,042 + -0.9
1,124,215 - Dshi_1096 0.21 +0.8
1,124,221 + Dshi_1096 0.22 +0.3
1,124,353 - Dshi_1096 0.41 -0.4
1,124,380 + Dshi_1096 0.45 +0.4
1,124,414 - Dshi_1096 0.50 +0.6
1,124,498 + Dshi_1096 0.63 +0.7
1,124,498 - Dshi_1096 0.63 -0.2
1,124,527 + Dshi_1096 0.67 +1.0
1,124,616 - Dshi_1096 0.80 +0.3
1,124,694 + -0.0
1,124,694 + +0.2
1,124,694 + +0.0
1,124,702 - +0.1
1,124,704 + +0.3
1,124,704 + -0.0
1,124,884 + +0.4
1,124,950 + -0.0
1,124,980 - +0.5
1,124,982 + -0.3
1,124,985 - +2.1
1,125,020 - Dshi_1097 0.12 -0.3
1,125,250 + Dshi_1097 0.33 -0.2
1,125,316 - Dshi_1097 0.39 +1.3
1,125,386 - Dshi_1097 0.46 -1.1
1,125,464 + Dshi_1097 0.53 +0.1
1,125,484 + Dshi_1097 0.55 +0.6
1,125,604 - Dshi_1097 0.66 -0.8
1,125,731 - Dshi_1097 0.78 -1.4
1,125,751 - Dshi_1097 0.80 +1.1

Or see this region's nucleotide sequence