Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1012 and Dshi_1013 are separated by 87 nucleotides Dshi_1013 and Dshi_1014 are separated by 2 nucleotides Dshi_1014 and Dshi_1015 are separated by 41 nucleotides
Dshi_1012: Dshi_1012 - Methionine adenosyltransferase (RefSeq), at 1,045,725 to 1,046,909
_1012
Dshi_1013: Dshi_1013 - apolipoprotein N-acyltransferase (RefSeq), at 1,046,997 to 1,048,490
_1013
Dshi_1014: Dshi_1014 - CBS domain containing protein (RefSeq), at 1,048,493 to 1,049,401
_1014
Dshi_1015: Dshi_1015 - protein of unknown function UPF0054 (RefSeq), at 1,049,443 to 1,049,988
_1015
Position (kb)
1046
1047
1048
1049 Strain fitness (log2 ratio)
-2
-1
0
1 at 1047.010 kb on + strand at 1047.010 kb on + strand at 1047.013 kb on - strand at 1047.089 kb on - strand at 1047.089 kb on - strand at 1047.147 kb on - strand, within Dshi_1013 at 1047.203 kb on - strand, within Dshi_1013 at 1047.330 kb on - strand, within Dshi_1013 at 1047.332 kb on + strand, within Dshi_1013 at 1047.362 kb on + strand, within Dshi_1013 at 1047.422 kb on - strand, within Dshi_1013 at 1047.471 kb on + strand, within Dshi_1013 at 1047.523 kb on + strand, within Dshi_1013 at 1047.663 kb on + strand, within Dshi_1013 at 1047.983 kb on + strand, within Dshi_1013 at 1047.983 kb on + strand, within Dshi_1013 at 1047.991 kb on - strand, within Dshi_1013 at 1047.991 kb on - strand, within Dshi_1013 at 1048.008 kb on - strand, within Dshi_1013 at 1048.014 kb on + strand, within Dshi_1013 at 1048.022 kb on - strand, within Dshi_1013 at 1048.058 kb on - strand, within Dshi_1013 at 1048.091 kb on + strand, within Dshi_1013 at 1048.116 kb on + strand, within Dshi_1013 at 1048.177 kb on + strand, within Dshi_1013 at 1048.185 kb on - strand, within Dshi_1013 at 1048.278 kb on - strand, within Dshi_1013 at 1048.288 kb on - strand, within Dshi_1013 at 1048.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 1,047,010 + +1.3 1,047,010 + +0.2 1,047,013 - +0.7 1,047,089 - -0.2 1,047,089 - -0.2 1,047,147 - Dshi_1013 0.10 +0.3 1,047,203 - Dshi_1013 0.14 +0.3 1,047,330 - Dshi_1013 0.22 -0.4 1,047,332 + Dshi_1013 0.22 -1.5 1,047,362 + Dshi_1013 0.24 -0.4 1,047,422 - Dshi_1013 0.28 -0.1 1,047,471 + Dshi_1013 0.32 -0.4 1,047,523 + Dshi_1013 0.35 -0.2 1,047,663 + Dshi_1013 0.45 -0.9 1,047,983 + Dshi_1013 0.66 +0.8 1,047,983 + Dshi_1013 0.66 +0.0 1,047,991 - Dshi_1013 0.67 -0.1 1,047,991 - Dshi_1013 0.67 -0.7 1,048,008 - Dshi_1013 0.68 -0.4 1,048,014 + Dshi_1013 0.68 -0.9 1,048,022 - Dshi_1013 0.69 -0.2 1,048,058 - Dshi_1013 0.71 -0.4 1,048,091 + Dshi_1013 0.73 -1.3 1,048,116 + Dshi_1013 0.75 -0.9 1,048,177 + Dshi_1013 0.79 +0.2 1,048,185 - Dshi_1013 0.80 -0.2 1,048,278 - Dshi_1013 0.86 -0.1 1,048,288 - Dshi_1013 0.86 -1.0 1,048,829 - -1.8
Or see this region's nucleotide sequence