Experiment: m.b. benzoic 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0861 and Dshi_0862 are separated by 128 nucleotides Dshi_0862 and Dshi_0863 are separated by 32 nucleotides Dshi_0863 and Dshi_0864 are separated by 214 nucleotides Dshi_0864 and Dshi_0865 are separated by 1 nucleotides
Dshi_0861: Dshi_0861 - inner-membrane translocator (RefSeq), at 876,610 to 877,527
_0861
Dshi_0862: Dshi_0862 - Extracellular ligand-binding receptor (RefSeq), at 877,656 to 878,795
_0862
Dshi_0863: Dshi_0863 - transcriptional regulator, AsnC family (RefSeq), at 878,828 to 879,064
_0863
Dshi_0864: Dshi_0864 - (2Fe-2S)-binding domain protein (RefSeq), at 879,279 to 879,737
_0864
Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922
_0865
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.726 kb on - strand, within Dshi_0861 at 876.742 kb on + strand, within Dshi_0861 at 876.872 kb on - strand, within Dshi_0861 at 876.892 kb on - strand, within Dshi_0861 at 876.950 kb on + strand, within Dshi_0861 at 877.051 kb on + strand, within Dshi_0861 at 877.158 kb on + strand, within Dshi_0861 at 877.259 kb on - strand, within Dshi_0861 at 877.349 kb on + strand, within Dshi_0861 at 877.391 kb on + strand, within Dshi_0861 at 877.433 kb on - strand, within Dshi_0861 at 877.441 kb on - strand at 877.441 kb on - strand at 877.550 kb on + strand at 877.570 kb on + strand at 877.802 kb on - strand, within Dshi_0862 at 877.905 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 877.941 kb on + strand, within Dshi_0862 at 878.018 kb on + strand, within Dshi_0862 at 878.104 kb on - strand, within Dshi_0862 at 878.225 kb on + strand, within Dshi_0862 at 878.227 kb on - strand, within Dshi_0862 at 878.230 kb on + strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.238 kb on - strand, within Dshi_0862 at 878.254 kb on + strand, within Dshi_0862 at 878.294 kb on + strand, within Dshi_0862 at 878.317 kb on + strand, within Dshi_0862 at 878.372 kb on + strand, within Dshi_0862 at 878.401 kb on - strand, within Dshi_0862 at 878.464 kb on - strand, within Dshi_0862 at 878.482 kb on + strand, within Dshi_0862 at 878.553 kb on - strand, within Dshi_0862 at 878.621 kb on - strand at 878.681 kb on - strand, within Dshi_0862 at 878.726 kb on + strand at 878.734 kb on - strand at 878.738 kb on - strand at 878.739 kb on - strand at 878.779 kb on - strand at 878.826 kb on + strand at 878.842 kb on + strand at 878.850 kb on - strand at 878.906 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.911 kb on + strand, within Dshi_0863 at 878.995 kb on + strand, within Dshi_0863 at 879.003 kb on - strand, within Dshi_0863 at 879.049 kb on - strand at 879.059 kb on + strand at 879.067 kb on - strand at 879.067 kb on - strand at 879.081 kb on - strand at 879.112 kb on + strand at 879.192 kb on - strand at 879.221 kb on - strand at 879.231 kb on - strand at 879.245 kb on - strand at 879.294 kb on - strand at 879.369 kb on - strand, within Dshi_0864 at 879.502 kb on - strand, within Dshi_0864 at 879.528 kb on + strand, within Dshi_0864 at 879.571 kb on + strand, within Dshi_0864 at 879.678 kb on - strand, within Dshi_0864 at 879.752 kb on - strand at 879.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.16 mg/ml remove 876,726 - Dshi_0861 0.13 -0.0 876,742 + Dshi_0861 0.14 +0.5 876,872 - Dshi_0861 0.29 -1.4 876,892 - Dshi_0861 0.31 +0.6 876,950 + Dshi_0861 0.37 +1.4 877,051 + Dshi_0861 0.48 -0.0 877,158 + Dshi_0861 0.60 +2.1 877,259 - Dshi_0861 0.71 +0.5 877,349 + Dshi_0861 0.81 -0.1 877,391 + Dshi_0861 0.85 -0.8 877,433 - Dshi_0861 0.90 +0.0 877,441 - -1.1 877,441 - -0.1 877,550 + -0.2 877,570 + -0.0 877,802 - Dshi_0862 0.13 +0.1 877,905 + Dshi_0862 0.22 -0.8 877,941 + Dshi_0862 0.25 +0.0 877,941 + Dshi_0862 0.25 -0.2 878,018 + Dshi_0862 0.32 +0.0 878,104 - Dshi_0862 0.39 -0.9 878,225 + Dshi_0862 0.50 -0.0 878,227 - Dshi_0862 0.50 -1.0 878,230 + Dshi_0862 0.50 -0.3 878,238 - Dshi_0862 0.51 +1.1 878,238 - Dshi_0862 0.51 +0.7 878,254 + Dshi_0862 0.52 +1.4 878,294 + Dshi_0862 0.56 +0.5 878,317 + Dshi_0862 0.58 +0.2 878,372 + Dshi_0862 0.63 -0.9 878,401 - Dshi_0862 0.65 +0.1 878,464 - Dshi_0862 0.71 -1.2 878,482 + Dshi_0862 0.72 +1.0 878,553 - Dshi_0862 0.79 -0.0 878,621 - -1.2 878,681 - Dshi_0862 0.90 +0.6 878,726 + +0.5 878,734 - +2.1 878,738 - -0.2 878,739 - +0.5 878,779 - -0.7 878,826 + -0.2 878,842 + -1.2 878,850 - +1.2 878,906 + Dshi_0863 0.33 +0.2 878,911 + Dshi_0863 0.35 -0.5 878,911 + Dshi_0863 0.35 +0.9 878,995 + Dshi_0863 0.70 +0.4 879,003 - Dshi_0863 0.74 -2.5 879,049 - +0.3 879,059 + -0.5 879,067 - -0.2 879,067 - -0.2 879,081 - -0.2 879,112 + -0.2 879,192 - +0.6 879,221 - +0.8 879,231 - +0.1 879,245 - -0.2 879,294 - +0.8 879,369 - Dshi_0864 0.20 -0.5 879,502 - Dshi_0864 0.49 +0.8 879,528 + Dshi_0864 0.54 -0.1 879,571 + Dshi_0864 0.64 -0.9 879,678 - Dshi_0864 0.87 -1.3 879,752 - +0.9 879,758 - -0.0
Or see this region's nucleotide sequence