Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5005 and Psyr_5006 are separated by 191 nucleotides Psyr_5006 and Psyr_5007 are separated by 20 nucleotides Psyr_5007 and Psyr_5008 are separated by 318 nucleotides
Psyr_5005: Psyr_5005 - protein of unknown function DUF945, at 5,936,543 to 5,938,108
_5005
Psyr_5006: Psyr_5006 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,938,300 to 5,938,989
_5006
Psyr_5007: Psyr_5007 - Aldo/keto reductase, at 5,939,010 to 5,940,017
_5007
Psyr_5008: Psyr_5008 - transcriptional regulator, GntR family, at 5,940,336 to 5,941,073
_5008
Position (kb) 5939
5940
5941 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.018 kb on + strand at 5938.019 kb on - strand at 5938.019 kb on - strand at 5938.024 kb on + strand at 5938.103 kb on + strand at 5938.103 kb on + strand at 5938.103 kb on + strand at 5938.104 kb on - strand at 5938.167 kb on + strand at 5938.241 kb on - strand at 5938.384 kb on + strand, within Psyr_5006 at 5938.384 kb on + strand, within Psyr_5006 at 5938.384 kb on + strand, within Psyr_5006 at 5938.385 kb on - strand, within Psyr_5006 at 5938.486 kb on + strand, within Psyr_5006 at 5938.487 kb on - strand, within Psyr_5006 at 5938.623 kb on + strand, within Psyr_5006 at 5938.626 kb on + strand, within Psyr_5006 at 5938.626 kb on + strand, within Psyr_5006 at 5938.627 kb on - strand, within Psyr_5006 at 5938.627 kb on - strand, within Psyr_5006 at 5938.627 kb on - strand, within Psyr_5006 at 5938.663 kb on + strand, within Psyr_5006 at 5938.663 kb on + strand, within Psyr_5006 at 5938.664 kb on - strand, within Psyr_5006 at 5938.664 kb on - strand, within Psyr_5006 at 5938.664 kb on - strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.870 kb on + strand, within Psyr_5006 at 5938.871 kb on - strand, within Psyr_5006 at 5938.871 kb on - strand, within Psyr_5006 at 5938.871 kb on - strand, within Psyr_5006 at 5938.912 kb on + strand, within Psyr_5006 at 5938.913 kb on - strand, within Psyr_5006 at 5939.017 kb on - strand at 5939.112 kb on - strand, within Psyr_5007 at 5939.166 kb on + strand, within Psyr_5007 at 5939.166 kb on + strand, within Psyr_5007 at 5939.166 kb on + strand, within Psyr_5007 at 5939.167 kb on - strand, within Psyr_5007 at 5939.167 kb on - strand, within Psyr_5007 at 5939.167 kb on - strand, within Psyr_5007 at 5939.167 kb on - strand, within Psyr_5007 at 5939.167 kb on - strand, within Psyr_5007 at 5939.346 kb on + strand, within Psyr_5007 at 5939.347 kb on - strand, within Psyr_5007 at 5939.347 kb on - strand, within Psyr_5007 at 5939.347 kb on - strand, within Psyr_5007 at 5939.354 kb on + strand, within Psyr_5007 at 5939.355 kb on - strand, within Psyr_5007 at 5939.355 kb on - strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.358 kb on + strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.359 kb on - strand, within Psyr_5007 at 5939.361 kb on + strand, within Psyr_5007 at 5939.361 kb on + strand, within Psyr_5007 at 5939.361 kb on + strand, within Psyr_5007 at 5939.362 kb on - strand, within Psyr_5007 at 5939.436 kb on - strand, within Psyr_5007 at 5939.544 kb on + strand, within Psyr_5007 at 5939.544 kb on + strand, within Psyr_5007 at 5939.544 kb on + strand, within Psyr_5007 at 5939.544 kb on + strand, within Psyr_5007 at 5939.545 kb on - strand, within Psyr_5007 at 5939.619 kb on + strand, within Psyr_5007 at 5939.619 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.651 kb on + strand, within Psyr_5007 at 5939.652 kb on - strand, within Psyr_5007 at 5939.652 kb on - strand, within Psyr_5007 at 5939.652 kb on - strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.655 kb on + strand, within Psyr_5007 at 5939.656 kb on - strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.769 kb on + strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.770 kb on - strand, within Psyr_5007 at 5939.883 kb on + strand, within Psyr_5007 at 5939.883 kb on + strand, within Psyr_5007 at 5939.884 kb on - strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.885 kb on + strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5939.886 kb on - strand, within Psyr_5007 at 5940.096 kb on + strand at 5940.097 kb on - strand at 5940.131 kb on + strand at 5940.131 kb on + strand at 5940.131 kb on + strand at 5940.132 kb on - strand at 5940.132 kb on - strand at 5940.143 kb on - strand at 5940.162 kb on + strand at 5940.167 kb on + strand at 5940.167 kb on + strand at 5940.167 kb on + strand at 5940.168 kb on - strand at 5940.168 kb on - strand at 5940.168 kb on - strand at 5940.168 kb on - strand at 5940.175 kb on + strand at 5940.175 kb on + strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.176 kb on - strand at 5940.240 kb on + strand at 5940.241 kb on - strand at 5940.241 kb on - strand at 5940.241 kb on - strand at 5940.329 kb on + strand at 5940.330 kb on - strand at 5940.330 kb on - strand at 5940.350 kb on + strand at 5940.350 kb on + strand at 5940.351 kb on - strand at 5940.443 kb on + strand, within Psyr_5008 at 5940.627 kb on + strand, within Psyr_5008 at 5940.628 kb on - strand, within Psyr_5008 at 5940.640 kb on + strand, within Psyr_5008 at 5940.640 kb on + strand, within Psyr_5008 at 5940.640 kb on + strand, within Psyr_5008 at 5940.641 kb on - strand, within Psyr_5008 at 5940.641 kb on - strand, within Psyr_5008 at 5940.714 kb on + strand, within Psyr_5008 at 5940.714 kb on + strand, within Psyr_5008 at 5940.714 kb on + strand, within Psyr_5008 at 5940.714 kb on + strand, within Psyr_5008 at 5940.715 kb on - strand, within Psyr_5008 at 5940.789 kb on + strand, within Psyr_5008 at 5940.789 kb on + strand, within Psyr_5008 at 5940.790 kb on - strand, within Psyr_5008 at 5940.790 kb on - strand, within Psyr_5008 at 5940.790 kb on - strand, within Psyr_5008
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,938,018 + +0.3 5,938,018 + +0.4 5,938,018 + +0.6 5,938,018 + +1.5 5,938,018 + -2.2 5,938,018 + +0.1 5,938,018 + -1.1 5,938,018 + +2.1 5,938,019 - -0.4 5,938,019 - +0.7 5,938,024 + +0.1 5,938,103 + +0.6 5,938,103 + -0.2 5,938,103 + +0.3 5,938,104 - +0.0 5,938,167 + +0.6 5,938,241 - +0.1 5,938,384 + Psyr_5006 0.12 +1.3 5,938,384 + Psyr_5006 0.12 +1.1 5,938,384 + Psyr_5006 0.12 -0.4 5,938,385 - Psyr_5006 0.12 -0.1 5,938,486 + Psyr_5006 0.27 +0.3 5,938,487 - Psyr_5006 0.27 +1.1 5,938,623 + Psyr_5006 0.47 -0.1 5,938,626 + Psyr_5006 0.47 +2.0 5,938,626 + Psyr_5006 0.47 +0.4 5,938,627 - Psyr_5006 0.47 -0.4 5,938,627 - Psyr_5006 0.47 -0.3 5,938,627 - Psyr_5006 0.47 +0.0 5,938,663 + Psyr_5006 0.53 +0.1 5,938,663 + Psyr_5006 0.53 +0.0 5,938,664 - Psyr_5006 0.53 -0.7 5,938,664 - Psyr_5006 0.53 +1.7 5,938,664 - Psyr_5006 0.53 +0.2 5,938,870 + Psyr_5006 0.83 +0.1 5,938,870 + Psyr_5006 0.83 +0.9 5,938,870 + Psyr_5006 0.83 +0.5 5,938,870 + Psyr_5006 0.83 -0.0 5,938,870 + Psyr_5006 0.83 +0.3 5,938,870 + Psyr_5006 0.83 -1.5 5,938,871 - Psyr_5006 0.83 +1.1 5,938,871 - Psyr_5006 0.83 +0.5 5,938,871 - Psyr_5006 0.83 +2.7 5,938,912 + Psyr_5006 0.89 +0.9 5,938,913 - Psyr_5006 0.89 -0.3 5,939,017 - -0.5 5,939,112 - Psyr_5007 0.10 +0.2 5,939,166 + Psyr_5007 0.15 -0.5 5,939,166 + Psyr_5007 0.15 -0.1 5,939,166 + Psyr_5007 0.15 +0.3 5,939,167 - Psyr_5007 0.16 -0.8 5,939,167 - Psyr_5007 0.16 -0.2 5,939,167 - Psyr_5007 0.16 -0.4 5,939,167 - Psyr_5007 0.16 +0.6 5,939,167 - Psyr_5007 0.16 +0.6 5,939,346 + Psyr_5007 0.33 +0.3 5,939,347 - Psyr_5007 0.33 -0.0 5,939,347 - Psyr_5007 0.33 -0.8 5,939,347 - Psyr_5007 0.33 +0.7 5,939,354 + Psyr_5007 0.34 +0.1 5,939,355 - Psyr_5007 0.34 -0.9 5,939,355 - Psyr_5007 0.34 +1.8 5,939,358 + Psyr_5007 0.35 +0.3 5,939,358 + Psyr_5007 0.35 -0.1 5,939,358 + Psyr_5007 0.35 +1.4 5,939,358 + Psyr_5007 0.35 +0.1 5,939,358 + Psyr_5007 0.35 +0.6 5,939,358 + Psyr_5007 0.35 +0.8 5,939,358 + Psyr_5007 0.35 +1.3 5,939,358 + Psyr_5007 0.35 -1.5 5,939,358 + Psyr_5007 0.35 +0.5 5,939,358 + Psyr_5007 0.35 +0.3 5,939,358 + Psyr_5007 0.35 +0.6 5,939,358 + Psyr_5007 0.35 -0.2 5,939,358 + Psyr_5007 0.35 +1.3 5,939,358 + Psyr_5007 0.35 -0.7 5,939,358 + Psyr_5007 0.35 +0.9 5,939,358 + Psyr_5007 0.35 -0.3 5,939,358 + Psyr_5007 0.35 +0.5 5,939,358 + Psyr_5007 0.35 +0.2 5,939,358 + Psyr_5007 0.35 +0.3 5,939,358 + Psyr_5007 0.35 +1.4 5,939,359 - Psyr_5007 0.35 -0.9 5,939,359 - Psyr_5007 0.35 -0.8 5,939,359 - Psyr_5007 0.35 +0.8 5,939,359 - Psyr_5007 0.35 +0.2 5,939,359 - Psyr_5007 0.35 +1.7 5,939,359 - Psyr_5007 0.35 +1.0 5,939,359 - Psyr_5007 0.35 +0.3 5,939,359 - Psyr_5007 0.35 +1.5 5,939,359 - Psyr_5007 0.35 +0.3 5,939,359 - Psyr_5007 0.35 -0.7 5,939,359 - Psyr_5007 0.35 +1.7 5,939,359 - Psyr_5007 0.35 +0.7 5,939,359 - Psyr_5007 0.35 +2.3 5,939,359 - Psyr_5007 0.35 -0.2 5,939,359 - Psyr_5007 0.35 -1.7 5,939,359 - Psyr_5007 0.35 -0.8 5,939,359 - Psyr_5007 0.35 +0.6 5,939,359 - Psyr_5007 0.35 -0.5 5,939,359 - Psyr_5007 0.35 -0.1 5,939,359 - Psyr_5007 0.35 -0.5 5,939,359 - Psyr_5007 0.35 +1.2 5,939,359 - Psyr_5007 0.35 -0.7 5,939,359 - Psyr_5007 0.35 -0.2 5,939,361 + Psyr_5007 0.35 -0.1 5,939,361 + Psyr_5007 0.35 -0.2 5,939,361 + Psyr_5007 0.35 +1.1 5,939,362 - Psyr_5007 0.35 +0.7 5,939,436 - Psyr_5007 0.42 -0.1 5,939,544 + Psyr_5007 0.53 +1.3 5,939,544 + Psyr_5007 0.53 +2.7 5,939,544 + Psyr_5007 0.53 -0.5 5,939,544 + Psyr_5007 0.53 +1.8 5,939,545 - Psyr_5007 0.53 +0.5 5,939,619 + Psyr_5007 0.60 -1.2 5,939,619 + Psyr_5007 0.60 -0.2 5,939,651 + Psyr_5007 0.64 -0.2 5,939,651 + Psyr_5007 0.64 +0.3 5,939,651 + Psyr_5007 0.64 +0.3 5,939,651 + Psyr_5007 0.64 -0.6 5,939,651 + Psyr_5007 0.64 +0.6 5,939,651 + Psyr_5007 0.64 -1.4 5,939,651 + Psyr_5007 0.64 +0.2 5,939,651 + Psyr_5007 0.64 -0.2 5,939,651 + Psyr_5007 0.64 -0.0 5,939,652 - Psyr_5007 0.64 -0.9 5,939,652 - Psyr_5007 0.64 +1.6 5,939,652 - Psyr_5007 0.64 -0.3 5,939,655 + Psyr_5007 0.64 +1.2 5,939,655 + Psyr_5007 0.64 +0.0 5,939,655 + Psyr_5007 0.64 -0.1 5,939,655 + Psyr_5007 0.64 -1.2 5,939,655 + Psyr_5007 0.64 -0.5 5,939,655 + Psyr_5007 0.64 +0.9 5,939,655 + Psyr_5007 0.64 +0.0 5,939,655 + Psyr_5007 0.64 -0.4 5,939,656 - Psyr_5007 0.64 -1.7 5,939,769 + Psyr_5007 0.75 -0.5 5,939,769 + Psyr_5007 0.75 -0.4 5,939,769 + Psyr_5007 0.75 +1.1 5,939,769 + Psyr_5007 0.75 +0.9 5,939,769 + Psyr_5007 0.75 +0.1 5,939,769 + Psyr_5007 0.75 +0.7 5,939,769 + Psyr_5007 0.75 -0.3 5,939,769 + Psyr_5007 0.75 -0.8 5,939,769 + Psyr_5007 0.75 +0.8 5,939,769 + Psyr_5007 0.75 -0.2 5,939,769 + Psyr_5007 0.75 +0.1 5,939,769 + Psyr_5007 0.75 -0.0 5,939,769 + Psyr_5007 0.75 +0.6 5,939,770 - Psyr_5007 0.75 +0.2 5,939,770 - Psyr_5007 0.75 +0.5 5,939,770 - Psyr_5007 0.75 -0.1 5,939,770 - Psyr_5007 0.75 +1.2 5,939,770 - Psyr_5007 0.75 +1.2 5,939,770 - Psyr_5007 0.75 -0.3 5,939,770 - Psyr_5007 0.75 +0.5 5,939,770 - Psyr_5007 0.75 -0.4 5,939,770 - Psyr_5007 0.75 +0.0 5,939,883 + Psyr_5007 0.87 +0.7 5,939,883 + Psyr_5007 0.87 +0.5 5,939,884 - Psyr_5007 0.87 -0.3 5,939,885 + Psyr_5007 0.87 -0.5 5,939,885 + Psyr_5007 0.87 +2.0 5,939,885 + Psyr_5007 0.87 +1.7 5,939,885 + Psyr_5007 0.87 -0.9 5,939,885 + Psyr_5007 0.87 -0.1 5,939,885 + Psyr_5007 0.87 +0.8 5,939,885 + Psyr_5007 0.87 +1.4 5,939,886 - Psyr_5007 0.87 +0.8 5,939,886 - Psyr_5007 0.87 -1.2 5,939,886 - Psyr_5007 0.87 -0.2 5,939,886 - Psyr_5007 0.87 -0.1 5,939,886 - Psyr_5007 0.87 +1.1 5,939,886 - Psyr_5007 0.87 +0.7 5,940,096 + +3.4 5,940,097 - +1.8 5,940,131 + -2.7 5,940,131 + +0.2 5,940,131 + +0.8 5,940,132 - +1.6 5,940,132 - +1.9 5,940,143 - +0.3 5,940,162 + -0.3 5,940,167 + +0.6 5,940,167 + -1.4 5,940,167 + +0.4 5,940,168 - +2.1 5,940,168 - +0.8 5,940,168 - +0.4 5,940,168 - -0.0 5,940,175 + -0.4 5,940,175 + -0.6 5,940,176 - +1.3 5,940,176 - -0.6 5,940,176 - -0.7 5,940,176 - +0.6 5,940,176 - +0.5 5,940,176 - -1.2 5,940,176 - +0.6 5,940,240 + +0.2 5,940,241 - +0.1 5,940,241 - -0.7 5,940,241 - +1.2 5,940,329 + -0.6 5,940,330 - +0.9 5,940,330 - +1.5 5,940,350 + +0.1 5,940,350 + +0.5 5,940,351 - -0.0 5,940,443 + Psyr_5008 0.14 +1.8 5,940,627 + Psyr_5008 0.39 +0.1 5,940,628 - Psyr_5008 0.40 -2.1 5,940,640 + Psyr_5008 0.41 -1.5 5,940,640 + Psyr_5008 0.41 +0.7 5,940,640 + Psyr_5008 0.41 +1.3 5,940,641 - Psyr_5008 0.41 -1.6 5,940,641 - Psyr_5008 0.41 -1.0 5,940,714 + Psyr_5008 0.51 +0.8 5,940,714 + Psyr_5008 0.51 -0.7 5,940,714 + Psyr_5008 0.51 -0.0 5,940,714 + Psyr_5008 0.51 +0.3 5,940,715 - Psyr_5008 0.51 +0.1 5,940,789 + Psyr_5008 0.61 -0.5 5,940,789 + Psyr_5008 0.61 +0.5 5,940,790 - Psyr_5008 0.62 -0.5 5,940,790 - Psyr_5008 0.62 -0.1 5,940,790 - Psyr_5008 0.62 -0.2
Or see this region's nucleotide sequence