Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4735 and Psyr_4736 overlap by 8 nucleotides Psyr_4736 and Psyr_4737 are separated by 109 nucleotides Psyr_4737 and Psyr_4738 are separated by 190 nucleotides
Psyr_4735: Psyr_4735 - GTP-binding protein, HSR1-related protein, at 5,613,980 to 5,615,368
_4735
Psyr_4736: Psyr_4736 - conserved hypothetical protein, at 5,615,361 to 5,616,740
_4736
Psyr_4737: Psyr_4737 - dihydrofolate reductase, at 5,616,850 to 5,617,362
_4737
Psyr_4738: Psyr_4738 - conserved hypothetical protein, at 5,617,553 to 5,618,611
_4738
Position (kb) 5615
5616
5617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5614.527 kb on + strand, within Psyr_4735 at 5614.528 kb on - strand, within Psyr_4735 at 5614.956 kb on + strand, within Psyr_4735 at 5614.957 kb on - strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.992 kb on + strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5614.993 kb on - strand, within Psyr_4735 at 5615.178 kb on + strand, within Psyr_4735 at 5615.287 kb on + strand at 5615.287 kb on + strand at 5615.287 kb on + strand at 5615.288 kb on - strand at 5615.288 kb on - strand at 5615.288 kb on - strand at 5615.288 kb on - strand at 5615.317 kb on + strand at 5615.317 kb on + strand at 5615.654 kb on + strand, within Psyr_4736 at 5615.654 kb on + strand, within Psyr_4736 at 5615.724 kb on + strand, within Psyr_4736 at 5615.848 kb on + strand, within Psyr_4736 at 5616.350 kb on + strand, within Psyr_4736 at 5616.351 kb on - strand, within Psyr_4736 at 5616.775 kb on - strand at 5616.775 kb on - strand at 5617.441 kb on + strand at 5617.442 kb on - strand at 5617.442 kb on - strand at 5617.487 kb on - strand at 5617.487 kb on - strand at 5617.503 kb on + strand at 5617.504 kb on - strand at 5617.504 kb on - strand at 5617.553 kb on - strand at 5617.700 kb on + strand, within Psyr_4738 at 5617.701 kb on - strand, within Psyr_4738
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,614,527 + Psyr_4735 0.39 +0.4 5,614,528 - Psyr_4735 0.39 +0.0 5,614,956 + Psyr_4735 0.70 +0.7 5,614,957 - Psyr_4735 0.70 -0.4 5,614,992 + Psyr_4735 0.73 -1.0 5,614,992 + Psyr_4735 0.73 -0.5 5,614,992 + Psyr_4735 0.73 +0.2 5,614,992 + Psyr_4735 0.73 +0.2 5,614,992 + Psyr_4735 0.73 -0.7 5,614,992 + Psyr_4735 0.73 +1.4 5,614,992 + Psyr_4735 0.73 -0.7 5,614,992 + Psyr_4735 0.73 +0.6 5,614,993 - Psyr_4735 0.73 +0.5 5,614,993 - Psyr_4735 0.73 +1.5 5,614,993 - Psyr_4735 0.73 -1.1 5,614,993 - Psyr_4735 0.73 +1.0 5,614,993 - Psyr_4735 0.73 -0.7 5,614,993 - Psyr_4735 0.73 +0.8 5,615,178 + Psyr_4735 0.86 +0.9 5,615,287 + +0.8 5,615,287 + -0.8 5,615,287 + +0.4 5,615,288 - -0.8 5,615,288 - +0.4 5,615,288 - -1.1 5,615,288 - +0.5 5,615,317 + -0.5 5,615,317 + -0.0 5,615,654 + Psyr_4736 0.21 +1.5 5,615,654 + Psyr_4736 0.21 -3.7 5,615,724 + Psyr_4736 0.26 -0.4 5,615,848 + Psyr_4736 0.35 -0.7 5,616,350 + Psyr_4736 0.72 +0.7 5,616,351 - Psyr_4736 0.72 -1.5 5,616,775 - +0.2 5,616,775 - +0.7 5,617,441 + -0.1 5,617,442 - +0.7 5,617,442 - +0.8 5,617,487 - +0.5 5,617,487 - -0.7 5,617,503 + +0.0 5,617,504 - +1.3 5,617,504 - +0.2 5,617,553 - -1.2 5,617,700 + Psyr_4738 0.14 -1.2 5,617,701 - Psyr_4738 0.14 +0.3
Or see this region's nucleotide sequence