Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4721 and Psyr_4722 are separated by 224 nucleotides Psyr_4722 and Psyr_4723 overlap by 21 nucleotides
Psyr_4721: Psyr_4721 - hypothetical protein, at 5,594,942 to 5,600,755
_4721
Psyr_4722: Psyr_4722 - conserved hypothetical protein, at 5,600,980 to 5,601,543
_4722
Psyr_4723: Psyr_4723 - hypothetical protein, at 5,601,523 to 5,602,581
_4723
Position (kb) 5600
5601
5602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5600.117 kb on - strand, within Psyr_4721 at 5600.124 kb on - strand, within Psyr_4721 at 5600.207 kb on + strand at 5600.207 kb on + strand at 5600.208 kb on - strand at 5600.208 kb on - strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.209 kb on + strand at 5600.210 kb on - strand at 5600.210 kb on - strand at 5600.210 kb on - strand at 5600.210 kb on - strand at 5600.210 kb on - strand at 5600.306 kb on + strand at 5600.324 kb on - strand at 5600.603 kb on + strand at 5600.604 kb on - strand at 5600.674 kb on + strand at 5600.690 kb on + strand at 5600.690 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.742 kb on + strand at 5600.743 kb on - strand at 5600.743 kb on - strand at 5600.743 kb on - strand at 5600.743 kb on - strand at 5600.743 kb on - strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.819 kb on + strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.820 kb on - strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.823 kb on + strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.824 kb on - strand at 5600.828 kb on - strand at 5601.138 kb on + strand, within Psyr_4722 at 5601.139 kb on - strand, within Psyr_4722 at 5601.351 kb on + strand, within Psyr_4722 at 5601.351 kb on + strand, within Psyr_4722 at 5601.351 kb on + strand, within Psyr_4722 at 5601.351 kb on + strand, within Psyr_4722 at 5601.351 kb on + strand, within Psyr_4722 at 5601.352 kb on - strand, within Psyr_4722 at 5601.352 kb on - strand, within Psyr_4722 at 5601.352 kb on - strand, within Psyr_4722 at 5601.473 kb on - strand, within Psyr_4722 at 5601.473 kb on - strand, within Psyr_4722 at 5601.553 kb on + strand at 5601.553 kb on + strand at 5601.554 kb on - strand at 5601.554 kb on - strand at 5601.554 kb on - strand at 5601.554 kb on - strand at 5601.554 kb on - strand at 5601.555 kb on + strand at 5601.555 kb on + strand at 5601.556 kb on - strand at 5601.556 kb on - strand at 5601.556 kb on - strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.574 kb on + strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.575 kb on - strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.576 kb on + strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.577 kb on - strand at 5601.590 kb on + strand at 5601.591 kb on - strand at 5601.591 kb on - strand at 5601.591 kb on - strand at 5601.591 kb on - strand at 5601.606 kb on + strand at 5601.607 kb on - strand at 5601.676 kb on + strand, within Psyr_4723 at 5601.677 kb on - strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.741 kb on - strand, within Psyr_4723 at 5601.765 kb on - strand, within Psyr_4723 at 5601.767 kb on + strand, within Psyr_4723 at 5601.768 kb on - strand, within Psyr_4723 at 5601.768 kb on - strand, within Psyr_4723 at 5601.861 kb on + strand, within Psyr_4723 at 5601.861 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.925 kb on - strand, within Psyr_4723 at 5601.937 kb on + strand, within Psyr_4723 at 5601.938 kb on - strand, within Psyr_4723 at 5602.030 kb on + strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.077 kb on - strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.271 kb on + strand, within Psyr_4723 at 5602.384 kb on + strand, within Psyr_4723 at 5602.385 kb on - strand, within Psyr_4723 at 5602.429 kb on + strand, within Psyr_4723 at 5602.429 kb on + strand, within Psyr_4723 at 5602.430 kb on - strand, within Psyr_4723 at 5602.430 kb on - strand, within Psyr_4723 at 5602.492 kb on + strand at 5602.492 kb on + strand at 5602.493 kb on - strand at 5602.493 kb on - strand at 5602.493 kb on - strand at 5602.521 kb on - strand at 5602.526 kb on + strand at 5602.527 kb on - strand at 5602.527 kb on - strand at 5602.527 kb on - strand at 5602.528 kb on + strand at 5602.528 kb on + strand at 5602.529 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,600,117 - Psyr_4721 0.89 +0.3 5,600,124 - Psyr_4721 0.89 -1.4 5,600,207 + -0.2 5,600,207 + +0.5 5,600,208 - -0.0 5,600,208 - +0.4 5,600,209 + +0.5 5,600,209 + -1.5 5,600,209 + -0.4 5,600,209 + -0.3 5,600,209 + +1.1 5,600,209 + -0.3 5,600,209 + -0.2 5,600,209 + +0.7 5,600,209 + -0.5 5,600,209 + -1.0 5,600,210 - -0.5 5,600,210 - -2.6 5,600,210 - -0.2 5,600,210 - -0.4 5,600,210 - -0.4 5,600,306 + +0.2 5,600,324 - +0.5 5,600,603 + +0.5 5,600,604 - -1.5 5,600,674 + -1.1 5,600,690 + -0.4 5,600,690 + -0.5 5,600,742 + -0.6 5,600,742 + +1.1 5,600,742 + +0.4 5,600,742 + +0.8 5,600,742 + +1.1 5,600,742 + -0.8 5,600,742 + +1.4 5,600,742 + +0.2 5,600,742 + +1.2 5,600,742 + -0.1 5,600,742 + +0.3 5,600,742 + -0.3 5,600,743 - +0.1 5,600,743 - -0.2 5,600,743 - +0.7 5,600,743 - -0.5 5,600,743 - -0.2 5,600,819 + -1.8 5,600,819 + +0.2 5,600,819 + +1.1 5,600,819 + +2.2 5,600,819 + -0.2 5,600,819 + +0.5 5,600,819 + -0.4 5,600,819 + +0.6 5,600,819 + -1.2 5,600,819 + -0.3 5,600,819 + -0.2 5,600,819 + +1.7 5,600,819 + -0.0 5,600,819 + +0.7 5,600,819 + -0.4 5,600,819 + -0.4 5,600,819 + +0.7 5,600,819 + -0.1 5,600,820 - +0.9 5,600,820 - -0.1 5,600,820 - -0.8 5,600,820 - -1.2 5,600,820 - -0.1 5,600,820 - +0.6 5,600,820 - -0.1 5,600,820 - +1.9 5,600,820 - -0.3 5,600,820 - -1.2 5,600,820 - +0.1 5,600,820 - -0.4 5,600,820 - +0.6 5,600,820 - +1.2 5,600,820 - -1.2 5,600,820 - +0.2 5,600,820 - +0.2 5,600,820 - -1.3 5,600,820 - -1.1 5,600,823 + +0.4 5,600,823 + +0.7 5,600,823 + +0.0 5,600,823 + +0.3 5,600,823 + -1.3 5,600,823 + -0.2 5,600,823 + +0.6 5,600,823 + -1.5 5,600,823 + -0.4 5,600,823 + -0.3 5,600,823 + -0.8 5,600,823 + +0.5 5,600,824 - +0.1 5,600,824 - -0.6 5,600,824 - -1.5 5,600,824 - +0.7 5,600,824 - -0.3 5,600,824 - -0.2 5,600,824 - +0.3 5,600,824 - +0.1 5,600,824 - +0.4 5,600,824 - +1.6 5,600,824 - +0.7 5,600,824 - +0.9 5,600,824 - -1.3 5,600,824 - +0.4 5,600,824 - -1.9 5,600,824 - +1.5 5,600,824 - -0.4 5,600,828 - +0.7 5,601,138 + Psyr_4722 0.28 +0.5 5,601,139 - Psyr_4722 0.28 +0.0 5,601,351 + Psyr_4722 0.66 +0.6 5,601,351 + Psyr_4722 0.66 +0.3 5,601,351 + Psyr_4722 0.66 -0.6 5,601,351 + Psyr_4722 0.66 +0.6 5,601,351 + Psyr_4722 0.66 +1.1 5,601,352 - Psyr_4722 0.66 +1.6 5,601,352 - Psyr_4722 0.66 -2.7 5,601,352 - Psyr_4722 0.66 +0.8 5,601,473 - Psyr_4722 0.87 -0.0 5,601,473 - Psyr_4722 0.87 -0.6 5,601,553 + -2.7 5,601,553 + +0.3 5,601,554 - +0.8 5,601,554 - -1.7 5,601,554 - -0.1 5,601,554 - +0.0 5,601,554 - +1.2 5,601,555 + +1.1 5,601,555 + +0.1 5,601,556 - +0.0 5,601,556 - +0.5 5,601,556 - +0.5 5,601,574 + +0.2 5,601,574 + -1.5 5,601,574 + +0.6 5,601,574 + -1.4 5,601,574 + -0.6 5,601,574 + -1.4 5,601,574 + -1.6 5,601,574 + -1.3 5,601,574 + -0.5 5,601,574 + -0.3 5,601,574 + +1.3 5,601,574 + -0.5 5,601,574 + -0.3 5,601,574 + +0.0 5,601,574 + -0.7 5,601,574 + -1.0 5,601,575 - -2.4 5,601,575 - +0.7 5,601,575 - +0.4 5,601,575 - -0.0 5,601,575 - -0.7 5,601,575 - -0.4 5,601,575 - -0.8 5,601,575 - -0.6 5,601,575 - -1.4 5,601,576 + -0.4 5,601,576 + +0.4 5,601,576 + -0.2 5,601,576 + -0.2 5,601,576 + +1.0 5,601,576 + -1.0 5,601,576 + -0.4 5,601,576 + -0.7 5,601,576 + +0.3 5,601,576 + +0.1 5,601,576 + -0.5 5,601,576 + +1.0 5,601,576 + +1.1 5,601,577 - -0.0 5,601,577 - -0.1 5,601,577 - -1.0 5,601,577 - -1.9 5,601,577 - -0.2 5,601,577 - +0.4 5,601,577 - +0.0 5,601,577 - -0.7 5,601,590 + +1.1 5,601,591 - -1.3 5,601,591 - +0.1 5,601,591 - -0.7 5,601,591 - -0.5 5,601,606 + +0.6 5,601,607 - -0.3 5,601,676 + Psyr_4723 0.14 -0.0 5,601,677 - Psyr_4723 0.15 +0.1 5,601,740 + Psyr_4723 0.20 -0.4 5,601,740 + Psyr_4723 0.20 +0.3 5,601,740 + Psyr_4723 0.20 +0.9 5,601,741 - Psyr_4723 0.21 -1.5 5,601,765 - Psyr_4723 0.23 +0.1 5,601,767 + Psyr_4723 0.23 +0.5 5,601,768 - Psyr_4723 0.23 +0.1 5,601,768 - Psyr_4723 0.23 +0.3 5,601,861 + Psyr_4723 0.32 -1.7 5,601,861 + Psyr_4723 0.32 +0.5 5,601,924 + Psyr_4723 0.38 -0.9 5,601,924 + Psyr_4723 0.38 +0.1 5,601,924 + Psyr_4723 0.38 -0.6 5,601,924 + Psyr_4723 0.38 -0.3 5,601,925 - Psyr_4723 0.38 -1.3 5,601,937 + Psyr_4723 0.39 +0.6 5,601,938 - Psyr_4723 0.39 +0.8 5,602,030 + Psyr_4723 0.48 +0.6 5,602,031 - Psyr_4723 0.48 +1.4 5,602,031 - Psyr_4723 0.48 +0.4 5,602,031 - Psyr_4723 0.48 +0.4 5,602,031 - Psyr_4723 0.48 -0.2 5,602,077 - Psyr_4723 0.52 +0.7 5,602,181 + Psyr_4723 0.62 +0.3 5,602,181 + Psyr_4723 0.62 -0.4 5,602,181 + Psyr_4723 0.62 +0.7 5,602,181 + Psyr_4723 0.62 +1.5 5,602,182 - Psyr_4723 0.62 +0.2 5,602,182 - Psyr_4723 0.62 -0.5 5,602,182 - Psyr_4723 0.62 +1.4 5,602,182 - Psyr_4723 0.62 -0.0 5,602,271 + Psyr_4723 0.71 +0.5 5,602,384 + Psyr_4723 0.81 +0.3 5,602,385 - Psyr_4723 0.81 +0.6 5,602,429 + Psyr_4723 0.86 -0.4 5,602,429 + Psyr_4723 0.86 -0.1 5,602,430 - Psyr_4723 0.86 -0.5 5,602,430 - Psyr_4723 0.86 -0.2 5,602,492 + +0.1 5,602,492 + +1.6 5,602,493 - -0.6 5,602,493 - -0.4 5,602,493 - +0.4 5,602,521 - -1.7 5,602,526 + -0.4 5,602,527 - -0.4 5,602,527 - -0.2 5,602,527 - -2.1 5,602,528 + +0.9 5,602,528 + -0.4 5,602,529 - +0.2
Or see this region's nucleotide sequence