Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4593

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4592 and Psyr_4593 are separated by 130 nucleotidesPsyr_4593 and Psyr_4594 overlap by 4 nucleotidesPsyr_4594 and Psyr_4595 are separated by 60 nucleotides Psyr_4592: Psyr_4592 - Phage tail tape measure protein TP901, core region, at 5,452,336 to 5,454,495 _4592 Psyr_4593: Psyr_4593 - sigma factor domain protein, at 5,454,626 to 5,454,922 _4593 Psyr_4594: Psyr_4594 - conserved hypothetical protein, at 5,454,919 to 5,455,266 _4594 Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823 _4595 Position (kb) 5454 5455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5454.143 kb on - strand, within Psyr_4592at 5454.143 kb on - strand, within Psyr_4592at 5454.143 kb on - strand, within Psyr_4592at 5454.143 kb on - strand, within Psyr_4592at 5454.396 kb on + strandat 5454.397 kb on - strandat 5454.397 kb on - strandat 5454.397 kb on - strandat 5454.484 kb on - strandat 5454.601 kb on + strandat 5454.601 kb on + strandat 5454.602 kb on - strandat 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.808 kb on - strand, within Psyr_4593at 5454.845 kb on - strand, within Psyr_4593at 5455.002 kb on - strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.149 kb on - strand, within Psyr_4594at 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.273 kb on + strandat 5455.273 kb on + strandat 5455.322 kb on + strandat 5455.328 kb on + strandat 5455.329 kb on - strandat 5455.343 kb on + strandat 5455.344 kb on - strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.395 kb on - strandat 5455.511 kb on + strand, within Psyr_4595at 5455.608 kb on - strand, within Psyr_4595at 5455.700 kb on + strand, within Psyr_4595at 5455.700 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.716 kb on - strand, within Psyr_4595at 5455.716 kb on - strand, within Psyr_4595at 5455.746 kb on - strand, within Psyr_4595at 5455.746 kb on - strand, within Psyr_4595at 5455.757 kb on + strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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5,454,143 - Psyr_4592 0.84 +0.4
5,454,143 - Psyr_4592 0.84 -0.5
5,454,143 - Psyr_4592 0.84 -0.3
5,454,143 - Psyr_4592 0.84 +1.2
5,454,396 + +0.4
5,454,397 - +0.4
5,454,397 - -1.7
5,454,397 - -0.7
5,454,484 - -0.4
5,454,601 + -0.7
5,454,601 + -0.8
5,454,602 - -1.1
5,454,754 - Psyr_4593 0.43 -0.9
5,454,754 - Psyr_4593 0.43 -0.1
5,454,754 - Psyr_4593 0.43 -1.2
5,454,754 - Psyr_4593 0.43 -0.4
5,454,808 - Psyr_4593 0.61 -0.7
5,454,845 - Psyr_4593 0.74 +0.1
5,455,002 - Psyr_4594 0.24 -0.2
5,455,019 + Psyr_4594 0.29 -1.9
5,455,019 + Psyr_4594 0.29 +0.5
5,455,019 + Psyr_4594 0.29 +0.0
5,455,019 + Psyr_4594 0.29 -0.7
5,455,019 + Psyr_4594 0.29 +0.7
5,455,019 + Psyr_4594 0.29 +0.3
5,455,020 - Psyr_4594 0.29 -0.3
5,455,020 - Psyr_4594 0.29 -0.3
5,455,020 - Psyr_4594 0.29 -0.2
5,455,020 - Psyr_4594 0.29 +0.4
5,455,020 - Psyr_4594 0.29 -0.4
5,455,145 + Psyr_4594 0.65 +1.3
5,455,145 + Psyr_4594 0.65 -0.0
5,455,145 + Psyr_4594 0.65 -0.8
5,455,145 + Psyr_4594 0.65 +1.6
5,455,145 + Psyr_4594 0.65 -0.5
5,455,145 + Psyr_4594 0.65 +1.6
5,455,145 + Psyr_4594 0.65 +0.8
5,455,145 + Psyr_4594 0.65 +1.2
5,455,145 + Psyr_4594 0.65 -0.2
5,455,145 + Psyr_4594 0.65 +0.5
5,455,146 - Psyr_4594 0.65 -1.4
5,455,146 - Psyr_4594 0.65 -1.1
5,455,146 - Psyr_4594 0.65 -0.9
5,455,146 - Psyr_4594 0.65 -1.5
5,455,146 - Psyr_4594 0.65 -0.5
5,455,146 - Psyr_4594 0.65 -0.4
5,455,149 - Psyr_4594 0.66 -0.0
5,455,238 + +0.9
5,455,238 + +0.3
5,455,238 + +1.5
5,455,238 + -0.4
5,455,238 + +3.7
5,455,239 - -2.3
5,455,239 - -0.5
5,455,239 - +0.4
5,455,239 - +0.4
5,455,239 - +0.5
5,455,273 + +0.4
5,455,273 + +0.5
5,455,322 + -0.4
5,455,328 + +0.6
5,455,329 - +0.6
5,455,343 + +0.2
5,455,344 - +1.3
5,455,394 + +0.9
5,455,394 + -1.1
5,455,394 + -1.3
5,455,394 + +0.1
5,455,394 + +0.3
5,455,394 + +0.2
5,455,395 - +0.2
5,455,511 + Psyr_4595 0.12 +0.8
5,455,608 - Psyr_4595 0.19 -0.2
5,455,700 + Psyr_4595 0.25 +1.9
5,455,700 + Psyr_4595 0.25 +0.8
5,455,715 + Psyr_4595 0.26 +0.9
5,455,715 + Psyr_4595 0.26 -0.6
5,455,715 + Psyr_4595 0.26 +0.0
5,455,715 + Psyr_4595 0.26 -0.5
5,455,716 - Psyr_4595 0.26 +1.4
5,455,716 - Psyr_4595 0.26 -1.9
5,455,746 - Psyr_4595 0.28 -0.8
5,455,746 - Psyr_4595 0.28 -1.1
5,455,757 + Psyr_4595 0.29 +0.6
5,455,758 - Psyr_4595 0.29 -0.1
5,455,758 - Psyr_4595 0.29 +0.9
5,455,758 - Psyr_4595 0.29 +1.0
5,455,758 - Psyr_4595 0.29 +0.1
5,455,758 - Psyr_4595 0.29 +0.1

Or see this region's nucleotide sequence