Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4516

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4515 and Psyr_4516 are separated by 411 nucleotidesPsyr_4516 and Psyr_4517 overlap by 97 nucleotides Psyr_4515: Psyr_4515 - hypothetical protein, at 5,378,999 to 5,380,201 _4515 Psyr_4516: Psyr_4516 - hypothetical protein, at 5,380,613 to 5,381,140 _4516 Psyr_4517: Psyr_4517 - SEC-C motif protein, at 5,381,044 to 5,382,201 _4517 Position (kb) 5380 5381 5382Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5379.632 kb on + strand, within Psyr_4515at 5379.644 kb on + strand, within Psyr_4515at 5379.733 kb on + strand, within Psyr_4515at 5379.734 kb on - strand, within Psyr_4515at 5379.734 kb on - strand, within Psyr_4515at 5379.737 kb on + strand, within Psyr_4515at 5379.737 kb on + strand, within Psyr_4515at 5379.738 kb on - strand, within Psyr_4515at 5379.738 kb on - strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.758 kb on + strand, within Psyr_4515at 5379.759 kb on - strand, within Psyr_4515at 5379.759 kb on - strand, within Psyr_4515at 5379.759 kb on - strandat 5379.766 kb on + strand, within Psyr_4515at 5379.949 kb on - strand, within Psyr_4515at 5379.949 kb on - strand, within Psyr_4515at 5379.949 kb on - strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.001 kb on + strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.002 kb on - strand, within Psyr_4515at 5380.014 kb on + strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.015 kb on - strand, within Psyr_4515at 5380.018 kb on + strand, within Psyr_4515at 5380.018 kb on + strand, within Psyr_4515at 5380.018 kb on + strand, within Psyr_4515at 5380.019 kb on - strand, within Psyr_4515at 5380.019 kb on - strand, within Psyr_4515at 5380.067 kb on + strand, within Psyr_4515at 5380.067 kb on + strand, within Psyr_4515at 5380.067 kb on + strand, within Psyr_4515at 5380.067 kb on + strand, within Psyr_4515at 5380.098 kb on - strandat 5380.098 kb on - strandat 5380.184 kb on + strandat 5380.185 kb on - strandat 5380.185 kb on - strandat 5380.185 kb on - strandat 5380.222 kb on + strandat 5380.223 kb on - strandat 5380.225 kb on - strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.268 kb on + strandat 5380.269 kb on - strandat 5380.269 kb on - strandat 5380.269 kb on - strandat 5380.269 kb on - strandat 5380.269 kb on - strandat 5380.269 kb on - strandat 5380.517 kb on + strandat 5380.521 kb on + strandat 5380.522 kb on - strandat 5380.522 kb on - strandat 5380.627 kb on + strandat 5380.627 kb on + strandat 5380.628 kb on - strandat 5380.687 kb on + strand, within Psyr_4516at 5380.688 kb on - strand, within Psyr_4516at 5380.688 kb on - strand, within Psyr_4516at 5380.688 kb on - strand, within Psyr_4516at 5380.688 kb on - strand, within Psyr_4516at 5380.722 kb on + strand, within Psyr_4516at 5380.723 kb on - strand, within Psyr_4516at 5380.731 kb on + strand, within Psyr_4516at 5380.731 kb on + strand, within Psyr_4516at 5380.731 kb on + strand, within Psyr_4516at 5380.732 kb on - strand, within Psyr_4516at 5380.739 kb on + strand, within Psyr_4516at 5380.739 kb on + strand, within Psyr_4516at 5380.740 kb on - strand, within Psyr_4516at 5380.740 kb on - strand, within Psyr_4516at 5380.740 kb on - strand, within Psyr_4516at 5380.740 kb on - strand, within Psyr_4516at 5380.740 kb on - strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.828 kb on + strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.829 kb on - strand, within Psyr_4516at 5380.877 kb on + strand, within Psyr_4516at 5380.877 kb on + strand, within Psyr_4516at 5380.877 kb on + strand, within Psyr_4516at 5380.878 kb on - strand, within Psyr_4516at 5380.878 kb on - strand, within Psyr_4516at 5380.878 kb on - strand, within Psyr_4516at 5380.878 kb on - strand, within Psyr_4516at 5380.878 kb on - strand, within Psyr_4516at 5381.023 kb on + strand, within Psyr_4516at 5381.045 kb on + strandat 5381.046 kb on - strandat 5381.046 kb on - strandat 5381.046 kb on - strandat 5381.046 kb on - strandat 5381.100 kb on + strandat 5381.194 kb on - strand, within Psyr_4517at 5381.277 kb on + strand, within Psyr_4517at 5381.278 kb on - strand, within Psyr_4517at 5381.290 kb on + strand, within Psyr_4517at 5381.323 kb on + strand, within Psyr_4517at 5381.324 kb on - strand, within Psyr_4517at 5381.324 kb on - strand, within Psyr_4517at 5381.368 kb on - strand, within Psyr_4517at 5381.376 kb on - strand, within Psyr_4517at 5381.380 kb on - strand, within Psyr_4517at 5381.380 kb on - strand, within Psyr_4517at 5381.483 kb on - strand, within Psyr_4517at 5381.485 kb on + strand, within Psyr_4517at 5381.485 kb on + strand, within Psyr_4517at 5381.485 kb on + strand, within Psyr_4517at 5381.485 kb on + strand, within Psyr_4517at 5381.487 kb on + strand, within Psyr_4517at 5381.574 kb on + strand, within Psyr_4517at 5381.622 kb on + strand, within Psyr_4517at 5381.622 kb on + strand, within Psyr_4517at 5381.623 kb on - strand, within Psyr_4517at 5381.626 kb on + strand, within Psyr_4517at 5381.626 kb on + strand, within Psyr_4517at 5381.627 kb on - strand, within Psyr_4517at 5381.627 kb on - strand, within Psyr_4517at 5381.629 kb on + strand, within Psyr_4517at 5381.734 kb on - strand, within Psyr_4517at 5381.770 kb on + strand, within Psyr_4517at 5381.770 kb on + strand, within Psyr_4517at 5381.770 kb on + strand, within Psyr_4517at 5381.819 kb on + strand, within Psyr_4517at 5381.841 kb on + strand, within Psyr_4517at 5381.842 kb on - strand, within Psyr_4517at 5381.919 kb on + strand, within Psyr_4517at 5381.923 kb on + strand, within Psyr_4517at 5381.924 kb on - strand, within Psyr_4517at 5381.924 kb on - strand, within Psyr_4517at 5381.926 kb on - strand, within Psyr_4517at 5381.973 kb on + strand, within Psyr_4517at 5381.976 kb on + strand, within Psyr_4517at 5381.977 kb on - strand, within Psyr_4517at 5381.977 kb on - strand, within Psyr_4517at 5382.039 kb on + strand, within Psyr_4517at 5382.117 kb on + strandat 5382.117 kb on + strandat 5382.119 kb on + strandat 5382.120 kb on - strandat 5382.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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5,379,632 + Psyr_4515 0.53 -0.6
5,379,644 + Psyr_4515 0.54 +0.2
5,379,733 + Psyr_4515 0.61 +0.4
5,379,734 - Psyr_4515 0.61 +0.9
5,379,734 - Psyr_4515 0.61 +1.2
5,379,737 + Psyr_4515 0.61 +0.8
5,379,737 + Psyr_4515 0.61 -0.1
5,379,738 - Psyr_4515 0.61 +0.2
5,379,738 - Psyr_4515 0.61 +0.5
5,379,758 + Psyr_4515 0.63 +0.1
5,379,758 + Psyr_4515 0.63 +1.2
5,379,758 + Psyr_4515 0.63 +0.4
5,379,758 + Psyr_4515 0.63 +1.9
5,379,758 + Psyr_4515 0.63 +0.3
5,379,758 + Psyr_4515 0.63 +1.3
5,379,759 - Psyr_4515 0.63 -0.7
5,379,759 - Psyr_4515 0.63 -0.1
5,379,759 - +0.2
5,379,766 + Psyr_4515 0.64 +0.3
5,379,949 - Psyr_4515 0.79 +1.5
5,379,949 - Psyr_4515 0.79 +0.3
5,379,949 - Psyr_4515 0.79 +1.9
5,380,001 + Psyr_4515 0.83 +0.9
5,380,001 + Psyr_4515 0.83 -2.0
5,380,001 + Psyr_4515 0.83 +0.2
5,380,001 + Psyr_4515 0.83 +0.3
5,380,001 + Psyr_4515 0.83 -0.4
5,380,001 + Psyr_4515 0.83 +0.0
5,380,001 + Psyr_4515 0.83 -0.0
5,380,001 + Psyr_4515 0.83 -1.2
5,380,001 + Psyr_4515 0.83 -0.7
5,380,001 + Psyr_4515 0.83 +0.4
5,380,001 + Psyr_4515 0.83 +0.4
5,380,002 - Psyr_4515 0.83 +1.2
5,380,002 - Psyr_4515 0.83 -0.4
5,380,002 - Psyr_4515 0.83 +1.6
5,380,002 - Psyr_4515 0.83 +0.4
5,380,002 - Psyr_4515 0.83 +1.5
5,380,002 - Psyr_4515 0.83 +1.6
5,380,002 - Psyr_4515 0.83 -0.3
5,380,002 - Psyr_4515 0.83 -1.9
5,380,002 - Psyr_4515 0.83 +1.3
5,380,002 - Psyr_4515 0.83 +2.2
5,380,014 + Psyr_4515 0.84 +0.5
5,380,015 - Psyr_4515 0.84 -0.3
5,380,015 - Psyr_4515 0.84 +2.0
5,380,015 - Psyr_4515 0.84 +0.5
5,380,015 - Psyr_4515 0.84 -0.4
5,380,015 - Psyr_4515 0.84 -0.5
5,380,015 - Psyr_4515 0.84 +1.5
5,380,015 - Psyr_4515 0.84 +0.7
5,380,015 - Psyr_4515 0.84 -0.1
5,380,015 - Psyr_4515 0.84 +0.1
5,380,018 + Psyr_4515 0.85 +0.6
5,380,018 + Psyr_4515 0.85 +0.4
5,380,018 + Psyr_4515 0.85 -0.3
5,380,019 - Psyr_4515 0.85 +0.7
5,380,019 - Psyr_4515 0.85 -0.5
5,380,067 + Psyr_4515 0.89 -0.7
5,380,067 + Psyr_4515 0.89 +0.9
5,380,067 + Psyr_4515 0.89 +0.7
5,380,067 + Psyr_4515 0.89 -0.7
5,380,098 - +0.7
5,380,098 - +0.5
5,380,184 + +1.1
5,380,185 - -0.7
5,380,185 - +1.0
5,380,185 - +1.0
5,380,222 + -0.5
5,380,223 - -0.0
5,380,225 - -0.6
5,380,268 + -0.1
5,380,268 + +0.2
5,380,268 + +0.1
5,380,268 + +0.8
5,380,268 + -0.3
5,380,268 + -0.1
5,380,268 + +0.5
5,380,268 + +0.5
5,380,269 - +1.4
5,380,269 - +1.5
5,380,269 - -0.5
5,380,269 - +0.2
5,380,269 - +2.9
5,380,269 - -0.1
5,380,517 + +0.9
5,380,521 + -0.7
5,380,522 - +0.9
5,380,522 - +0.7
5,380,627 + +0.9
5,380,627 + -1.3
5,380,628 - -0.1
5,380,687 + Psyr_4516 0.14 +0.6
5,380,688 - Psyr_4516 0.14 -1.3
5,380,688 - Psyr_4516 0.14 +0.4
5,380,688 - Psyr_4516 0.14 +0.7
5,380,688 - Psyr_4516 0.14 -0.7
5,380,722 + Psyr_4516 0.21 -0.1
5,380,723 - Psyr_4516 0.21 -0.1
5,380,731 + Psyr_4516 0.22 +0.2
5,380,731 + Psyr_4516 0.22 +2.1
5,380,731 + Psyr_4516 0.22 +0.6
5,380,732 - Psyr_4516 0.23 +0.5
5,380,739 + Psyr_4516 0.24 +0.5
5,380,739 + Psyr_4516 0.24 +0.9
5,380,740 - Psyr_4516 0.24 +1.2
5,380,740 - Psyr_4516 0.24 +0.9
5,380,740 - Psyr_4516 0.24 +0.3
5,380,740 - Psyr_4516 0.24 -0.0
5,380,740 - Psyr_4516 0.24 -0.3
5,380,828 + Psyr_4516 0.41 -0.4
5,380,828 + Psyr_4516 0.41 +1.1
5,380,828 + Psyr_4516 0.41 +0.3
5,380,828 + Psyr_4516 0.41 +1.1
5,380,828 + Psyr_4516 0.41 +0.5
5,380,828 + Psyr_4516 0.41 -0.5
5,380,828 + Psyr_4516 0.41 +0.8
5,380,828 + Psyr_4516 0.41 -0.6
5,380,828 + Psyr_4516 0.41 +0.1
5,380,829 - Psyr_4516 0.41 +0.1
5,380,829 - Psyr_4516 0.41 +0.4
5,380,829 - Psyr_4516 0.41 +3.9
5,380,829 - Psyr_4516 0.41 -0.5
5,380,829 - Psyr_4516 0.41 +1.9
5,380,829 - Psyr_4516 0.41 +0.3
5,380,829 - Psyr_4516 0.41 +0.9
5,380,829 - Psyr_4516 0.41 +1.5
5,380,829 - Psyr_4516 0.41 +0.8
5,380,877 + Psyr_4516 0.50 +1.8
5,380,877 + Psyr_4516 0.50 -0.1
5,380,877 + Psyr_4516 0.50 -0.5
5,380,878 - Psyr_4516 0.50 +1.2
5,380,878 - Psyr_4516 0.50 +0.4
5,380,878 - Psyr_4516 0.50 -0.3
5,380,878 - Psyr_4516 0.50 +0.5
5,380,878 - Psyr_4516 0.50 +0.7
5,381,023 + Psyr_4516 0.78 +1.3
5,381,045 + -0.2
5,381,046 - +0.8
5,381,046 - -0.3
5,381,046 - +1.2
5,381,046 - +0.8
5,381,100 + +1.7
5,381,194 - Psyr_4517 0.13 +0.0
5,381,277 + Psyr_4517 0.20 -0.4
5,381,278 - Psyr_4517 0.20 +0.9
5,381,290 + Psyr_4517 0.21 -0.0
5,381,323 + Psyr_4517 0.24 +0.7
5,381,324 - Psyr_4517 0.24 -0.1
5,381,324 - Psyr_4517 0.24 +0.3
5,381,368 - Psyr_4517 0.28 -0.1
5,381,376 - Psyr_4517 0.29 -0.1
5,381,380 - Psyr_4517 0.29 -0.6
5,381,380 - Psyr_4517 0.29 +0.7
5,381,483 - Psyr_4517 0.38 +0.7
5,381,485 + Psyr_4517 0.38 +0.6
5,381,485 + Psyr_4517 0.38 +1.3
5,381,485 + Psyr_4517 0.38 +2.0
5,381,485 + Psyr_4517 0.38 -0.3
5,381,487 + Psyr_4517 0.38 +0.9
5,381,574 + Psyr_4517 0.46 -1.0
5,381,622 + Psyr_4517 0.50 -0.1
5,381,622 + Psyr_4517 0.50 +1.0
5,381,623 - Psyr_4517 0.50 +0.0
5,381,626 + Psyr_4517 0.50 +0.2
5,381,626 + Psyr_4517 0.50 +0.9
5,381,627 - Psyr_4517 0.50 +0.0
5,381,627 - Psyr_4517 0.50 +0.7
5,381,629 + Psyr_4517 0.51 -0.3
5,381,734 - Psyr_4517 0.60 +0.9
5,381,770 + Psyr_4517 0.63 +1.9
5,381,770 + Psyr_4517 0.63 +0.6
5,381,770 + Psyr_4517 0.63 -0.3
5,381,819 + Psyr_4517 0.67 +0.6
5,381,841 + Psyr_4517 0.69 +0.9
5,381,842 - Psyr_4517 0.69 +0.5
5,381,919 + Psyr_4517 0.76 +0.9
5,381,923 + Psyr_4517 0.76 -0.0
5,381,924 - Psyr_4517 0.76 -0.1
5,381,924 - Psyr_4517 0.76 +0.6
5,381,926 - Psyr_4517 0.76 -0.8
5,381,973 + Psyr_4517 0.80 -0.4
5,381,976 + Psyr_4517 0.80 -1.1
5,381,977 - Psyr_4517 0.81 +1.5
5,381,977 - Psyr_4517 0.81 +0.7
5,382,039 + Psyr_4517 0.86 -0.3
5,382,117 + +0.9
5,382,117 + +1.2
5,382,119 + +0.6
5,382,120 - -0.3
5,382,120 - -0.3

Or see this region's nucleotide sequence