Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4466 and Psyr_4467 are separated by 54 nucleotides Psyr_4467 and Psyr_4468 are separated by 61 nucleotides Psyr_4468 and Psyr_4469 are separated by 302 nucleotides Psyr_4469 and Psyr_4470 are separated by 69 nucleotides
Psyr_4466: Psyr_4466 - Thioredoxin, at 5,327,920 to 5,328,792
_4466
Psyr_4467: Psyr_4467 - conserved hypothetical protein, at 5,328,847 to 5,329,200
_4467
Psyr_4468: Psyr_4468 - conserved hypothetical protein, at 5,329,262 to 5,329,684
_4468
Psyr_4469: Psyr_4469 - conserved hypothetical protein, at 5,329,987 to 5,330,574
_4469
Psyr_4470: Psyr_4470 - ABC transporter, at 5,330,644 to 5,331,354
_4470
Position (kb) 5329
5330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5328.398 kb on - strand, within Psyr_4466 at 5328.631 kb on + strand, within Psyr_4466 at 5328.631 kb on + strand, within Psyr_4466 at 5328.683 kb on - strand, within Psyr_4466 at 5328.719 kb on + strand at 5328.720 kb on - strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.787 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.790 kb on + strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.791 kb on - strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.795 kb on + strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.796 kb on - strand at 5328.869 kb on + strand at 5328.870 kb on - strand at 5329.192 kb on - strand at 5329.192 kb on - strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.227 kb on + strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.228 kb on - strand at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.485 kb on + strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.486 kb on - strand, within Psyr_4468 at 5329.633 kb on + strand, within Psyr_4468 at 5329.633 kb on + strand, within Psyr_4468 at 5329.634 kb on - strand, within Psyr_4468 at 5329.639 kb on + strand, within Psyr_4468 at 5329.639 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.641 kb on + strand, within Psyr_4468 at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.642 kb on - strand at 5329.688 kb on + strand at 5329.688 kb on + strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.689 kb on - strand at 5329.796 kb on + strand at 5329.824 kb on + strand at 5329.824 kb on + strand at 5329.825 kb on - strand at 5329.825 kb on - strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.828 kb on + strand at 5329.829 kb on - strand at 5329.829 kb on - strand at 5329.829 kb on - strand at 5329.834 kb on + strand at 5329.834 kb on + strand at 5329.834 kb on + strand at 5329.835 kb on - strand at 5329.835 kb on - strand at 5329.942 kb on - strand at 5329.968 kb on + strand at 5329.986 kb on + strand at 5330.111 kb on + strand, within Psyr_4469 at 5330.414 kb on - strand, within Psyr_4469 at 5330.414 kb on - strand, within Psyr_4469 at 5330.504 kb on + strand, within Psyr_4469 at 5330.504 kb on + strand, within Psyr_4469 at 5330.505 kb on - strand, within Psyr_4469 at 5330.505 kb on - strand, within Psyr_4469 at 5330.589 kb on - strand at 5330.589 kb on - strand at 5330.589 kb on - strand at 5330.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,328,398 - Psyr_4466 0.55 -0.4 5,328,631 + Psyr_4466 0.81 -0.0 5,328,631 + Psyr_4466 0.81 -0.5 5,328,683 - Psyr_4466 0.87 +0.4 5,328,719 + -0.2 5,328,720 - +0.2 5,328,787 + +0.5 5,328,787 + -0.9 5,328,787 + +1.1 5,328,787 + +0.5 5,328,787 + -0.1 5,328,787 + +0.2 5,328,790 + -0.7 5,328,790 + +1.2 5,328,790 + -1.7 5,328,790 + +0.5 5,328,790 + +0.4 5,328,791 - +1.3 5,328,791 - +0.5 5,328,791 - -0.1 5,328,791 - -0.8 5,328,791 - +0.3 5,328,791 - +1.2 5,328,795 + -1.2 5,328,795 + -0.5 5,328,795 + +0.6 5,328,795 + -0.3 5,328,795 + +0.4 5,328,796 - +0.2 5,328,796 - +0.3 5,328,796 - -1.1 5,328,796 - -0.1 5,328,796 - +0.9 5,328,869 + +0.7 5,328,870 - +0.9 5,329,192 - +1.6 5,329,192 - +0.3 5,329,227 + +0.6 5,329,227 + -0.1 5,329,227 + +0.9 5,329,227 + +0.2 5,329,227 + -0.5 5,329,228 - -0.6 5,329,228 - -1.1 5,329,228 - -0.6 5,329,228 - +1.0 5,329,228 - -0.5 5,329,228 - -1.4 5,329,228 - -1.2 5,329,228 - +1.3 5,329,228 - +2.0 5,329,228 - +0.1 5,329,228 - +0.5 5,329,228 - -0.7 5,329,228 - +2.2 5,329,228 - +0.7 5,329,228 - +0.5 5,329,485 + Psyr_4468 0.53 +2.4 5,329,485 + Psyr_4468 0.53 +0.5 5,329,485 + Psyr_4468 0.53 -0.0 5,329,485 + Psyr_4468 0.53 -0.0 5,329,485 + Psyr_4468 0.53 +0.9 5,329,486 - Psyr_4468 0.53 +0.6 5,329,486 - Psyr_4468 0.53 +0.9 5,329,486 - Psyr_4468 0.53 -0.3 5,329,486 - Psyr_4468 0.53 +0.2 5,329,486 - Psyr_4468 0.53 +0.9 5,329,633 + Psyr_4468 0.88 +1.9 5,329,633 + Psyr_4468 0.88 +0.5 5,329,634 - Psyr_4468 0.88 +0.2 5,329,639 + Psyr_4468 0.89 +0.4 5,329,639 + Psyr_4468 0.89 -1.2 5,329,641 + Psyr_4468 0.90 -0.8 5,329,641 + Psyr_4468 0.90 +0.2 5,329,641 + Psyr_4468 0.90 +0.3 5,329,641 + Psyr_4468 0.90 +0.0 5,329,641 + Psyr_4468 0.90 -0.0 5,329,641 + Psyr_4468 0.90 +0.9 5,329,641 + Psyr_4468 0.90 +0.5 5,329,641 + Psyr_4468 0.90 +0.6 5,329,641 + Psyr_4468 0.90 +0.6 5,329,641 + Psyr_4468 0.90 -0.4 5,329,641 + Psyr_4468 0.90 +0.9 5,329,641 + Psyr_4468 0.90 -0.0 5,329,641 + Psyr_4468 0.90 +0.3 5,329,641 + Psyr_4468 0.90 +1.2 5,329,641 + Psyr_4468 0.90 +0.5 5,329,642 - +0.2 5,329,642 - -0.9 5,329,642 - -0.8 5,329,642 - +1.2 5,329,642 - -0.3 5,329,688 + +0.7 5,329,688 + -0.5 5,329,689 - -1.4 5,329,689 - +0.0 5,329,689 - -0.6 5,329,689 - +1.4 5,329,689 - +0.6 5,329,689 - +0.4 5,329,796 + -0.2 5,329,824 + -0.1 5,329,824 + -0.1 5,329,825 - -1.6 5,329,825 - +0.7 5,329,828 + +0.6 5,329,828 + -2.7 5,329,828 + -1.2 5,329,828 + -0.4 5,329,828 + +1.4 5,329,828 + -0.8 5,329,828 + -0.6 5,329,828 + -0.1 5,329,829 - -0.1 5,329,829 - -0.6 5,329,829 - +0.3 5,329,834 + +1.1 5,329,834 + -1.1 5,329,834 + -1.6 5,329,835 - -2.1 5,329,835 - +1.8 5,329,942 - -0.9 5,329,968 + +1.0 5,329,986 + +0.8 5,330,111 + Psyr_4469 0.21 -0.3 5,330,414 - Psyr_4469 0.73 +1.1 5,330,414 - Psyr_4469 0.73 -0.6 5,330,504 + Psyr_4469 0.88 -0.4 5,330,504 + Psyr_4469 0.88 -0.2 5,330,505 - Psyr_4469 0.88 +0.6 5,330,505 - Psyr_4469 0.88 -1.2 5,330,589 - +0.1 5,330,589 - -0.2 5,330,589 - -0.5 5,330,617 - +0.0
Or see this region's nucleotide sequence