Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4441 and Psyr_4442 are separated by 277 nucleotides Psyr_4442 and Psyr_4443 are separated by 188 nucleotides Psyr_4443 and Psyr_4444 are separated by 152 nucleotides
Psyr_4441: Psyr_4441 - heat shock protein YegD, at 5,307,920 to 5,309,185
_4441
Psyr_4442: Psyr_4442 - membrane protein, putative, at 5,309,463 to 5,310,473
_4442
Psyr_4443: Psyr_4443 - hypothetical protein, at 5,310,662 to 5,310,952
_4443
Psyr_4444: Psyr_4444 - Protein of unknown function DUF6, at 5,311,105 to 5,311,986
_4444
Position (kb) 5309
5310
5311 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.667 kb on + strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.668 kb on - strand, within Psyr_4441 at 5308.687 kb on + strand, within Psyr_4441 at 5308.687 kb on + strand, within Psyr_4441 at 5308.687 kb on + strand, within Psyr_4441 at 5308.687 kb on + strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.688 kb on - strand, within Psyr_4441 at 5308.724 kb on + strand, within Psyr_4441 at 5308.725 kb on - strand, within Psyr_4441 at 5308.763 kb on + strand, within Psyr_4441 at 5309.184 kb on - strand at 5309.275 kb on + strand at 5309.384 kb on + strand at 5309.384 kb on + strand at 5309.384 kb on + strand at 5309.385 kb on - strand at 5309.385 kb on - strand at 5309.427 kb on + strand at 5309.447 kb on + strand at 5309.448 kb on - strand at 5309.448 kb on - strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.451 kb on + strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.452 kb on - strand at 5309.500 kb on + strand at 5309.501 kb on - strand at 5309.501 kb on - strand at 5309.501 kb on - strand at 5309.501 kb on - strand at 5309.501 kb on - strand at 5309.501 kb on - strand at 5309.506 kb on + strand at 5309.506 kb on + strand at 5309.506 kb on + strand at 5309.507 kb on - strand at 5309.507 kb on - strand at 5309.509 kb on + strand at 5309.509 kb on + strand at 5309.509 kb on + strand at 5309.509 kb on + strand at 5309.509 kb on + strand at 5309.509 kb on + strand at 5309.510 kb on - strand at 5309.510 kb on - strand at 5309.629 kb on + strand, within Psyr_4442 at 5309.629 kb on + strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.630 kb on - strand, within Psyr_4442 at 5309.832 kb on + strand, within Psyr_4442 at 5309.840 kb on + strand, within Psyr_4442 at 5309.840 kb on + strand, within Psyr_4442 at 5309.840 kb on + strand, within Psyr_4442 at 5309.841 kb on - strand, within Psyr_4442 at 5309.841 kb on - strand, within Psyr_4442 at 5309.841 kb on - strand, within Psyr_4442 at 5309.911 kb on + strand, within Psyr_4442 at 5309.966 kb on + strand, within Psyr_4442 at 5309.967 kb on - strand, within Psyr_4442 at 5309.967 kb on - strand, within Psyr_4442 at 5309.967 kb on - strand, within Psyr_4442 at 5310.121 kb on + strand, within Psyr_4442 at 5310.121 kb on + strand, within Psyr_4442 at 5310.121 kb on + strand, within Psyr_4442 at 5310.121 kb on + strand, within Psyr_4442 at 5310.121 kb on + strand, within Psyr_4442 at 5310.388 kb on - strand at 5310.388 kb on - strand at 5310.408 kb on + strand at 5310.424 kb on - strand at 5310.424 kb on - strand at 5310.424 kb on - strand at 5310.441 kb on + strand at 5310.442 kb on - strand at 5310.442 kb on - strand at 5310.444 kb on + strand at 5310.445 kb on - strand at 5310.445 kb on - strand at 5310.473 kb on + strand at 5310.474 kb on - strand at 5310.616 kb on - strand at 5310.920 kb on + strand, within Psyr_4443 at 5311.005 kb on + strand at 5311.006 kb on - strand at 5311.006 kb on - strand at 5311.073 kb on + strand at 5311.073 kb on + strand at 5311.074 kb on - strand at 5311.074 kb on - strand at 5311.074 kb on - strand at 5311.078 kb on - strand at 5311.078 kb on - strand at 5311.078 kb on - strand at 5311.078 kb on - strand at 5311.078 kb on - strand at 5311.090 kb on - strand at 5311.111 kb on + strand at 5311.112 kb on - strand at 5311.112 kb on - strand at 5311.112 kb on - strand at 5311.137 kb on + strand at 5311.199 kb on + strand, within Psyr_4444 at 5311.207 kb on + strand, within Psyr_4444 at 5311.207 kb on + strand, within Psyr_4444 at 5311.207 kb on + strand, within Psyr_4444 at 5311.208 kb on - strand, within Psyr_4444 at 5311.334 kb on - strand, within Psyr_4444 at 5311.348 kb on + strand, within Psyr_4444 at 5311.348 kb on + strand, within Psyr_4444 at 5311.349 kb on - strand, within Psyr_4444 at 5311.349 kb on - strand, within Psyr_4444 at 5311.349 kb on - strand, within Psyr_4444
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,308,667 + Psyr_4441 0.59 -1.7 5,308,667 + Psyr_4441 0.59 +0.1 5,308,667 + Psyr_4441 0.59 +1.0 5,308,667 + Psyr_4441 0.59 -0.2 5,308,667 + Psyr_4441 0.59 +0.2 5,308,667 + Psyr_4441 0.59 +0.3 5,308,667 + Psyr_4441 0.59 -0.8 5,308,667 + Psyr_4441 0.59 +0.7 5,308,667 + Psyr_4441 0.59 +1.5 5,308,667 + Psyr_4441 0.59 -1.4 5,308,667 + Psyr_4441 0.59 +0.0 5,308,668 - Psyr_4441 0.59 -1.2 5,308,668 - Psyr_4441 0.59 +0.2 5,308,668 - Psyr_4441 0.59 -1.3 5,308,668 - Psyr_4441 0.59 -0.2 5,308,668 - Psyr_4441 0.59 +0.9 5,308,668 - Psyr_4441 0.59 +0.6 5,308,668 - Psyr_4441 0.59 +0.1 5,308,668 - Psyr_4441 0.59 -0.0 5,308,668 - Psyr_4441 0.59 -0.3 5,308,668 - Psyr_4441 0.59 -0.8 5,308,668 - Psyr_4441 0.59 -0.4 5,308,668 - Psyr_4441 0.59 -0.6 5,308,687 + Psyr_4441 0.61 +1.1 5,308,687 + Psyr_4441 0.61 -0.2 5,308,687 + Psyr_4441 0.61 -0.2 5,308,687 + Psyr_4441 0.61 +0.2 5,308,688 - Psyr_4441 0.61 -1.5 5,308,688 - Psyr_4441 0.61 +0.2 5,308,688 - Psyr_4441 0.61 -0.6 5,308,688 - Psyr_4441 0.61 -0.9 5,308,688 - Psyr_4441 0.61 -0.1 5,308,688 - Psyr_4441 0.61 +0.5 5,308,688 - Psyr_4441 0.61 -2.1 5,308,724 + Psyr_4441 0.64 +0.8 5,308,725 - Psyr_4441 0.64 +0.8 5,308,763 + Psyr_4441 0.67 +0.6 5,309,184 - -1.6 5,309,275 + +0.7 5,309,384 + +1.1 5,309,384 + -0.9 5,309,384 + +0.2 5,309,385 - -0.1 5,309,385 - +0.3 5,309,427 + +0.2 5,309,447 + +0.4 5,309,448 - +0.6 5,309,448 - +1.3 5,309,451 + -2.6 5,309,451 + -0.8 5,309,451 + -0.4 5,309,451 + -0.1 5,309,451 + -1.9 5,309,451 + -0.1 5,309,451 + +0.6 5,309,451 + +1.0 5,309,451 + -0.1 5,309,451 + -0.2 5,309,451 + -0.1 5,309,451 + +0.1 5,309,451 + -0.7 5,309,451 + +1.1 5,309,451 + -0.1 5,309,452 - -0.8 5,309,452 - +0.4 5,309,452 - +0.5 5,309,452 - +0.1 5,309,452 - +0.5 5,309,452 - +0.3 5,309,452 - -0.9 5,309,452 - -0.2 5,309,452 - -0.1 5,309,500 + +2.5 5,309,501 - -0.6 5,309,501 - +0.5 5,309,501 - -1.5 5,309,501 - -1.2 5,309,501 - -0.2 5,309,501 - -0.4 5,309,506 + -0.1 5,309,506 + +0.6 5,309,506 + +0.1 5,309,507 - -0.5 5,309,507 - -0.3 5,309,509 + +1.3 5,309,509 + +1.6 5,309,509 + -0.7 5,309,509 + +0.3 5,309,509 + -1.3 5,309,509 + +1.2 5,309,510 - -1.0 5,309,510 - -0.3 5,309,629 + Psyr_4442 0.16 -1.2 5,309,629 + Psyr_4442 0.16 +0.6 5,309,630 - Psyr_4442 0.17 -0.3 5,309,630 - Psyr_4442 0.17 -0.2 5,309,630 - Psyr_4442 0.17 +1.2 5,309,630 - Psyr_4442 0.17 +0.3 5,309,630 - Psyr_4442 0.17 +0.7 5,309,630 - Psyr_4442 0.17 -0.9 5,309,630 - Psyr_4442 0.17 -0.1 5,309,832 + Psyr_4442 0.36 +1.3 5,309,840 + Psyr_4442 0.37 +0.9 5,309,840 + Psyr_4442 0.37 +0.8 5,309,840 + Psyr_4442 0.37 -0.5 5,309,841 - Psyr_4442 0.37 -1.2 5,309,841 - Psyr_4442 0.37 +0.1 5,309,841 - Psyr_4442 0.37 +0.0 5,309,911 + Psyr_4442 0.44 +0.8 5,309,966 + Psyr_4442 0.50 -0.2 5,309,967 - Psyr_4442 0.50 -0.1 5,309,967 - Psyr_4442 0.50 +1.8 5,309,967 - Psyr_4442 0.50 +0.6 5,310,121 + Psyr_4442 0.65 +0.5 5,310,121 + Psyr_4442 0.65 +0.8 5,310,121 + Psyr_4442 0.65 +0.4 5,310,121 + Psyr_4442 0.65 +1.1 5,310,121 + Psyr_4442 0.65 +0.6 5,310,388 - +0.1 5,310,388 - -1.4 5,310,408 + -0.1 5,310,424 - -0.3 5,310,424 - +0.3 5,310,424 - -0.1 5,310,441 + +2.1 5,310,442 - +0.5 5,310,442 - -0.5 5,310,444 + -1.1 5,310,445 - +0.1 5,310,445 - +0.5 5,310,473 + +0.5 5,310,474 - +1.1 5,310,616 - +1.1 5,310,920 + Psyr_4443 0.89 -2.2 5,311,005 + +0.6 5,311,006 - -1.8 5,311,006 - +1.1 5,311,073 + -0.7 5,311,073 + +0.2 5,311,074 - -0.6 5,311,074 - +0.5 5,311,074 - -0.1 5,311,078 - +1.0 5,311,078 - +2.3 5,311,078 - +0.5 5,311,078 - -0.3 5,311,078 - +0.9 5,311,090 - +0.6 5,311,111 + +0.2 5,311,112 - +0.9 5,311,112 - +0.1 5,311,112 - -0.5 5,311,137 + -0.2 5,311,199 + Psyr_4444 0.11 +0.1 5,311,207 + Psyr_4444 0.12 -0.4 5,311,207 + Psyr_4444 0.12 -1.1 5,311,207 + Psyr_4444 0.12 +0.9 5,311,208 - Psyr_4444 0.12 -0.7 5,311,334 - Psyr_4444 0.26 -0.7 5,311,348 + Psyr_4444 0.28 -0.1 5,311,348 + Psyr_4444 0.28 +0.5 5,311,349 - Psyr_4444 0.28 +1.7 5,311,349 - Psyr_4444 0.28 -0.3 5,311,349 - Psyr_4444 0.28 +2.9
Or see this region's nucleotide sequence