Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4392 and Psyr_4393 overlap by 1 nucleotides Psyr_4393 and Psyr_4394 are separated by 18 nucleotides Psyr_4394 and Psyr_4395 are separated by 1 nucleotides
Psyr_4392: Psyr_4392 - pilus assembly protein CpaE, at 5,253,975 to 5,255,165
_4392
Psyr_4393: Psyr_4393 - type II secretion system protein E, at 5,255,165 to 5,256,421
_4393
Psyr_4394: Psyr_4394 - type II secretion system protein, at 5,256,440 to 5,257,324
_4394
Psyr_4395: Psyr_4395 - type II secretion system protein, at 5,257,326 to 5,258,210
_4395
Position (kb) 5255
5256
5257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5254.479 kb on - strand, within Psyr_4392 at 5254.644 kb on + strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.645 kb on - strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.692 kb on + strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.693 kb on - strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.694 kb on + strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.695 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.748 kb on - strand, within Psyr_4392 at 5254.809 kb on + strand, within Psyr_4392 at 5254.810 kb on - strand, within Psyr_4392 at 5255.249 kb on + strand at 5255.249 kb on + strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.250 kb on - strand at 5255.342 kb on + strand, within Psyr_4393 at 5255.343 kb on - strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.078 kb on + strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.079 kb on - strand, within Psyr_4393 at 5256.118 kb on + strand, within Psyr_4393 at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.320 kb on + strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.321 kb on - strand at 5256.484 kb on + strand at 5256.506 kb on + strand at 5256.506 kb on + strand at 5256.507 kb on - strand at 5256.507 kb on - strand at 5256.671 kb on + strand, within Psyr_4394 at 5256.671 kb on + strand, within Psyr_4394 at 5256.672 kb on - strand, within Psyr_4394 at 5256.672 kb on - strand, within Psyr_4394 at 5256.685 kb on - strand, within Psyr_4394 at 5256.685 kb on - strand, within Psyr_4394 at 5256.776 kb on + strand, within Psyr_4394 at 5256.776 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.939 kb on + strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.940 kb on - strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.989 kb on + strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5256.990 kb on - strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.214 kb on + strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.215 kb on - strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.225 kb on + strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.226 kb on - strand, within Psyr_4394 at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.403 kb on + strand at 5257.403 kb on + strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 5,254,479 - Psyr_4392 0.42 -0.4 5,254,644 + Psyr_4392 0.56 +0.6 5,254,645 - Psyr_4392 0.56 -1.3 5,254,645 - Psyr_4392 0.56 -0.3 5,254,692 + Psyr_4392 0.60 -0.4 5,254,692 + Psyr_4392 0.60 +1.4 5,254,692 + Psyr_4392 0.60 +1.6 5,254,692 + Psyr_4392 0.60 +0.1 5,254,692 + Psyr_4392 0.60 +2.5 5,254,692 + Psyr_4392 0.60 -1.0 5,254,692 + Psyr_4392 0.60 +0.3 5,254,692 + Psyr_4392 0.60 +1.0 5,254,692 + Psyr_4392 0.60 +0.9 5,254,692 + Psyr_4392 0.60 -0.5 5,254,692 + Psyr_4392 0.60 -0.0 5,254,692 + Psyr_4392 0.60 +1.2 5,254,692 + Psyr_4392 0.60 -0.9 5,254,692 + Psyr_4392 0.60 -0.1 5,254,692 + Psyr_4392 0.60 -1.1 5,254,692 + Psyr_4392 0.60 -1.2 5,254,692 + Psyr_4392 0.60 -0.5 5,254,692 + Psyr_4392 0.60 +1.5 5,254,693 - Psyr_4392 0.60 +0.3 5,254,693 - Psyr_4392 0.60 +0.1 5,254,693 - Psyr_4392 0.60 -0.6 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 +0.0 5,254,693 - Psyr_4392 0.60 -0.2 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 -0.4 5,254,693 - Psyr_4392 0.60 +0.2 5,254,693 - Psyr_4392 0.60 -0.5 5,254,693 - Psyr_4392 0.60 +0.6 5,254,693 - Psyr_4392 0.60 -0.4 5,254,694 + Psyr_4392 0.60 -1.0 5,254,694 + Psyr_4392 0.60 +1.6 5,254,694 + Psyr_4392 0.60 -0.7 5,254,694 + Psyr_4392 0.60 -0.6 5,254,694 + Psyr_4392 0.60 -0.5 5,254,694 + Psyr_4392 0.60 +0.9 5,254,694 + Psyr_4392 0.60 -1.2 5,254,695 - Psyr_4392 0.60 -0.5 5,254,695 - Psyr_4392 0.60 +0.9 5,254,695 - Psyr_4392 0.60 -0.7 5,254,695 - Psyr_4392 0.60 +0.1 5,254,748 - Psyr_4392 0.65 -0.5 5,254,748 - Psyr_4392 0.65 +1.4 5,254,748 - Psyr_4392 0.65 +1.6 5,254,809 + Psyr_4392 0.70 -0.1 5,254,810 - Psyr_4392 0.70 +0.1 5,255,249 + +0.6 5,255,249 + -0.7 5,255,250 - -0.1 5,255,250 - -0.5 5,255,250 - -0.1 5,255,250 - +0.2 5,255,342 + Psyr_4393 0.14 -1.2 5,255,343 - Psyr_4393 0.14 +0.6 5,256,078 + Psyr_4393 0.73 -1.1 5,256,078 + Psyr_4393 0.73 -0.4 5,256,078 + Psyr_4393 0.73 -0.9 5,256,078 + Psyr_4393 0.73 -1.0 5,256,078 + Psyr_4393 0.73 +1.5 5,256,079 - Psyr_4393 0.73 -0.5 5,256,079 - Psyr_4393 0.73 -1.4 5,256,079 - Psyr_4393 0.73 -0.8 5,256,118 + Psyr_4393 0.76 +0.5 5,256,320 + -1.1 5,256,320 + -1.8 5,256,320 + -0.4 5,256,320 + -0.5 5,256,320 + +0.8 5,256,320 + +0.3 5,256,320 + -1.5 5,256,320 + +0.5 5,256,320 + +2.5 5,256,320 + -0.4 5,256,320 + +1.2 5,256,320 + +0.0 5,256,320 + -0.4 5,256,320 + +0.3 5,256,320 + -0.7 5,256,320 + -0.2 5,256,320 + +0.3 5,256,320 + -1.7 5,256,320 + +0.1 5,256,320 + +0.1 5,256,320 + +1.7 5,256,320 + -0.1 5,256,320 + +0.9 5,256,320 + -0.3 5,256,320 + +0.7 5,256,320 + +0.0 5,256,320 + -1.0 5,256,320 + +0.9 5,256,320 + +0.4 5,256,320 + -0.3 5,256,320 + -0.3 5,256,320 + +0.6 5,256,320 + -0.0 5,256,320 + +0.2 5,256,321 - -0.9 5,256,321 - -1.5 5,256,321 - -1.7 5,256,321 - +0.4 5,256,321 - +0.1 5,256,321 - +0.5 5,256,321 - +0.1 5,256,321 - -0.7 5,256,321 - +0.8 5,256,321 - +0.5 5,256,321 - -1.4 5,256,321 - -0.3 5,256,321 - -0.9 5,256,321 - +1.8 5,256,321 - +0.3 5,256,321 - +1.4 5,256,321 - -0.3 5,256,321 - -2.9 5,256,321 - +0.5 5,256,321 - +0.2 5,256,321 - +2.2 5,256,321 - -1.0 5,256,321 - +1.0 5,256,321 - -1.8 5,256,321 - +0.7 5,256,484 + -1.0 5,256,506 + +0.2 5,256,506 + -0.8 5,256,507 - -0.0 5,256,507 - -0.3 5,256,671 + Psyr_4394 0.26 +0.5 5,256,671 + Psyr_4394 0.26 +0.6 5,256,672 - Psyr_4394 0.26 -0.4 5,256,672 - Psyr_4394 0.26 +1.3 5,256,685 - Psyr_4394 0.28 -1.4 5,256,685 - Psyr_4394 0.28 -0.6 5,256,776 + Psyr_4394 0.38 -2.0 5,256,776 + Psyr_4394 0.38 +0.9 5,256,939 + Psyr_4394 0.56 +0.0 5,256,939 + Psyr_4394 0.56 -0.9 5,256,939 + Psyr_4394 0.56 -1.5 5,256,939 + Psyr_4394 0.56 -0.5 5,256,939 + Psyr_4394 0.56 -1.0 5,256,939 + Psyr_4394 0.56 +0.6 5,256,939 + Psyr_4394 0.56 +0.2 5,256,939 + Psyr_4394 0.56 +1.1 5,256,940 - Psyr_4394 0.56 -0.1 5,256,940 - Psyr_4394 0.56 +1.2 5,256,940 - Psyr_4394 0.56 -0.4 5,256,940 - Psyr_4394 0.56 +1.8 5,256,940 - Psyr_4394 0.56 -0.1 5,256,989 + Psyr_4394 0.62 -0.7 5,256,989 + Psyr_4394 0.62 -0.7 5,256,989 + Psyr_4394 0.62 -0.2 5,256,989 + Psyr_4394 0.62 +1.2 5,256,989 + Psyr_4394 0.62 -0.1 5,256,989 + Psyr_4394 0.62 -0.1 5,256,989 + Psyr_4394 0.62 +1.1 5,256,990 - Psyr_4394 0.62 +1.6 5,256,990 - Psyr_4394 0.62 +0.6 5,256,990 - Psyr_4394 0.62 +0.4 5,256,990 - Psyr_4394 0.62 +0.4 5,256,990 - Psyr_4394 0.62 -0.2 5,256,990 - Psyr_4394 0.62 +0.2 5,256,990 - Psyr_4394 0.62 +0.1 5,257,214 + Psyr_4394 0.87 +0.5 5,257,214 + Psyr_4394 0.87 -2.3 5,257,214 + Psyr_4394 0.87 -0.1 5,257,214 + Psyr_4394 0.87 -0.3 5,257,215 - Psyr_4394 0.88 +1.0 5,257,215 - Psyr_4394 0.88 -1.2 5,257,215 - Psyr_4394 0.88 -0.6 5,257,215 - Psyr_4394 0.88 +2.2 5,257,215 - Psyr_4394 0.88 -0.3 5,257,225 + Psyr_4394 0.89 -0.1 5,257,225 + Psyr_4394 0.89 -0.3 5,257,225 + Psyr_4394 0.89 +0.9 5,257,225 + Psyr_4394 0.89 +0.4 5,257,225 + Psyr_4394 0.89 +0.6 5,257,225 + Psyr_4394 0.89 -0.3 5,257,225 + Psyr_4394 0.89 -1.0 5,257,225 + Psyr_4394 0.89 -0.1 5,257,225 + Psyr_4394 0.89 -1.0 5,257,225 + Psyr_4394 0.89 +2.5 5,257,225 + Psyr_4394 0.89 -1.8 5,257,225 + Psyr_4394 0.89 -0.7 5,257,225 + Psyr_4394 0.89 +1.2 5,257,225 + Psyr_4394 0.89 -0.1 5,257,225 + Psyr_4394 0.89 -0.0 5,257,225 + Psyr_4394 0.89 -1.2 5,257,225 + Psyr_4394 0.89 +0.7 5,257,225 + Psyr_4394 0.89 -0.1 5,257,225 + Psyr_4394 0.89 -1.4 5,257,226 - Psyr_4394 0.89 -0.4 5,257,226 - Psyr_4394 0.89 -0.1 5,257,226 - Psyr_4394 0.89 -0.4 5,257,226 - Psyr_4394 0.89 -0.6 5,257,226 - Psyr_4394 0.89 +0.9 5,257,226 - Psyr_4394 0.89 +0.7 5,257,226 - Psyr_4394 0.89 +1.1 5,257,226 - Psyr_4394 0.89 +0.9 5,257,226 - Psyr_4394 0.89 +0.6 5,257,226 - Psyr_4394 0.89 -1.1 5,257,226 - Psyr_4394 0.89 -0.9 5,257,226 - Psyr_4394 0.89 -1.3 5,257,226 - Psyr_4394 0.89 -0.6 5,257,226 - Psyr_4394 0.89 +0.3 5,257,226 - Psyr_4394 0.89 +0.3 5,257,226 - Psyr_4394 0.89 -1.6 5,257,226 - Psyr_4394 0.89 +0.3 5,257,226 - Psyr_4394 0.89 +0.6 5,257,226 - Psyr_4394 0.89 +0.6 5,257,226 - Psyr_4394 0.89 -0.9 5,257,226 - Psyr_4394 0.89 -1.1 5,257,226 - Psyr_4394 0.89 -0.3 5,257,400 + +0.2 5,257,400 + +1.0 5,257,400 + +0.8 5,257,401 - +0.3 5,257,401 - -0.9 5,257,401 - -0.5 5,257,401 - -1.7 5,257,401 - -0.1 5,257,401 - +0.8 5,257,401 - -0.2 5,257,401 - +0.4 5,257,403 + -0.7 5,257,403 + -0.7 5,257,404 - -0.3 5,257,404 - -0.4 5,257,404 - +0.2 5,257,404 - +0.8
Or see this region's nucleotide sequence