Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4052

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4050 and Psyr_4051 are separated by 164 nucleotidesPsyr_4051 and Psyr_4052 are separated by 28 nucleotidesPsyr_4052 and Psyr_4053 are separated by 21 nucleotides Psyr_4050: Psyr_4050 - Protein of unknown function DUF479, at 4,833,333 to 4,833,932 _4050 Psyr_4051: Psyr_4051 - transcriptional regulator, ArsR family, at 4,834,097 to 4,834,411 _4051 Psyr_4052: Psyr_4052 - General substrate transporter:Major facilitator superfamily, at 4,834,440 to 4,835,606 _4052 Psyr_4053: Psyr_4053 - NADH:flavin oxidoreductase/NADH oxidase, at 4,835,628 to 4,836,677 _4053 Position (kb) 4834 4835 4836Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4833.619 kb on + strand, within Psyr_4050at 4833.620 kb on - strand, within Psyr_4050at 4833.620 kb on - strand, within Psyr_4050at 4833.718 kb on + strand, within Psyr_4050at 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.925 kb on + strandat 4833.926 kb on - strandat 4833.926 kb on - strandat 4833.926 kb on - strandat 4833.945 kb on - strandat 4833.945 kb on - strandat 4833.970 kb on + strandat 4833.973 kb on - strandat 4834.008 kb on + strandat 4834.008 kb on + strandat 4834.009 kb on - strandat 4834.016 kb on + strandat 4834.016 kb on + strandat 4834.016 kb on + strandat 4834.017 kb on - strandat 4834.017 kb on - strandat 4834.022 kb on + strandat 4834.022 kb on + strandat 4834.023 kb on - strandat 4834.049 kb on - strandat 4834.076 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.119 kb on + strandat 4834.120 kb on - strandat 4834.120 kb on - strandat 4834.120 kb on - strandat 4834.120 kb on - strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.122 kb on + strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.202 kb on + strand, within Psyr_4051at 4834.202 kb on + strand, within Psyr_4051at 4834.203 kb on - strand, within Psyr_4051at 4834.362 kb on + strand, within Psyr_4051at 4834.362 kb on + strand, within Psyr_4051at 4834.544 kb on - strandat 4834.710 kb on + strand, within Psyr_4052at 4834.710 kb on + strand, within Psyr_4052at 4834.711 kb on - strand, within Psyr_4052at 4834.711 kb on - strand, within Psyr_4052at 4834.861 kb on + strand, within Psyr_4052at 4834.862 kb on - strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.100 kb on + strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.101 kb on - strand, within Psyr_4052at 4835.135 kb on - strand, within Psyr_4052at 4835.135 kb on - strand, within Psyr_4052at 4835.278 kb on + strand, within Psyr_4052at 4835.558 kb on + strandat 4835.559 kb on - strandat 4835.598 kb on - strandat 4835.612 kb on + strandat 4835.612 kb on + strandat 4835.613 kb on - strandat 4835.625 kb on + strandat 4835.637 kb on - strandat 4835.752 kb on - strand, within Psyr_4053at 4835.752 kb on - strand, within Psyr_4053at 4835.752 kb on - strand, within Psyr_4053at 4835.752 kb on - strand, within Psyr_4053at 4835.752 kb on - strand, within Psyr_4053at 4835.752 kb on - strand, within Psyr_4053at 4835.754 kb on + strand, within Psyr_4053at 4835.754 kb on + strand, within Psyr_4053at 4835.754 kb on + strand, within Psyr_4053at 4835.754 kb on + strand, within Psyr_4053at 4835.754 kb on + strand, within Psyr_4053at 4835.755 kb on - strand, within Psyr_4053at 4835.755 kb on - strand, within Psyr_4053at 4835.755 kb on - strand, within Psyr_4053at 4835.861 kb on - strand, within Psyr_4053at 4835.955 kb on + strand, within Psyr_4053at 4836.043 kb on + strand, within Psyr_4053at 4836.043 kb on + strand, within Psyr_4053at 4836.044 kb on - strand, within Psyr_4053at 4836.044 kb on - strand, within Psyr_4053at 4836.159 kb on + strand, within Psyr_4053at 4836.159 kb on + strand, within Psyr_4053at 4836.160 kb on - strand, within Psyr_4053at 4836.292 kb on + strand, within Psyr_4053at 4836.292 kb on + strand, within Psyr_4053at 4836.292 kb on + strand, within Psyr_4053at 4836.292 kb on + strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.293 kb on - strand, within Psyr_4053at 4836.363 kb on + strand, within Psyr_4053at 4836.364 kb on - strand, within Psyr_4053at 4836.364 kb on - strand, within Psyr_4053at 4836.364 kb on - strand, within Psyr_4053at 4836.364 kb on - strand, within Psyr_4053at 4836.364 kb on - strand, within Psyr_4053at 4836.471 kb on + strand, within Psyr_4053at 4836.471 kb on + strand, within Psyr_4053at 4836.472 kb on - strand, within Psyr_4053at 4836.472 kb on - strand, within Psyr_4053at 4836.472 kb on - strand, within Psyr_4053at 4836.472 kb on - strand, within Psyr_4053at 4836.473 kb on + strand, within Psyr_4053at 4836.474 kb on - strand, within Psyr_4053at 4836.558 kb on + strand, within Psyr_4053at 4836.558 kb on + strand, within Psyr_4053at 4836.558 kb on + strand, within Psyr_4053at 4836.558 kb on + strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053at 4836.559 kb on - strand, within Psyr_4053

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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4,833,619 + Psyr_4050 0.48 +0.2
4,833,620 - Psyr_4050 0.48 +0.8
4,833,620 - Psyr_4050 0.48 +1.2
4,833,718 + Psyr_4050 0.64 +0.8
4,833,925 + +0.1
4,833,925 + +4.1
4,833,925 + -2.0
4,833,925 + +1.3
4,833,925 + -0.1
4,833,925 + -0.4
4,833,925 + -1.2
4,833,926 - -0.1
4,833,926 - -0.4
4,833,926 - +0.8
4,833,945 - +0.2
4,833,945 - +0.4
4,833,970 + -0.5
4,833,973 - +1.0
4,834,008 + -0.1
4,834,008 + -0.0
4,834,009 - -1.3
4,834,016 + +2.4
4,834,016 + -0.5
4,834,016 + -0.1
4,834,017 - +0.4
4,834,017 - -1.4
4,834,022 + +1.4
4,834,022 + +0.0
4,834,023 - -0.2
4,834,049 - -1.0
4,834,076 + -0.1
4,834,119 + -0.2
4,834,119 + +0.3
4,834,119 + +0.2
4,834,119 + -0.2
4,834,119 + +0.4
4,834,119 + -1.1
4,834,119 + +0.8
4,834,120 - -0.0
4,834,120 - +1.3
4,834,120 - +2.4
4,834,120 - +0.3
4,834,122 + +0.7
4,834,122 + -0.7
4,834,122 + +0.6
4,834,122 + -1.5
4,834,122 + +0.8
4,834,122 + +2.4
4,834,122 + -0.5
4,834,122 + +0.1
4,834,122 + -0.4
4,834,123 - +0.8
4,834,123 - +0.1
4,834,123 - -0.9
4,834,123 - +1.0
4,834,123 - +1.1
4,834,123 - -0.8
4,834,202 + Psyr_4051 0.33 -1.8
4,834,202 + Psyr_4051 0.33 +1.1
4,834,203 - Psyr_4051 0.34 -3.2
4,834,362 + Psyr_4051 0.84 +0.2
4,834,362 + Psyr_4051 0.84 -0.3
4,834,544 - -0.2
4,834,710 + Psyr_4052 0.23 -0.4
4,834,710 + Psyr_4052 0.23 -0.9
4,834,711 - Psyr_4052 0.23 -0.2
4,834,711 - Psyr_4052 0.23 -0.4
4,834,861 + Psyr_4052 0.36 -0.2
4,834,862 - Psyr_4052 0.36 -0.3
4,835,100 + Psyr_4052 0.57 -0.5
4,835,100 + Psyr_4052 0.57 -1.0
4,835,100 + Psyr_4052 0.57 -0.2
4,835,100 + Psyr_4052 0.57 -1.4
4,835,100 + Psyr_4052 0.57 -1.8
4,835,100 + Psyr_4052 0.57 -0.8
4,835,100 + Psyr_4052 0.57 +0.2
4,835,100 + Psyr_4052 0.57 -0.4
4,835,100 + Psyr_4052 0.57 -2.4
4,835,100 + Psyr_4052 0.57 +0.2
4,835,100 + Psyr_4052 0.57 -0.8
4,835,100 + Psyr_4052 0.57 +0.9
4,835,100 + Psyr_4052 0.57 +1.1
4,835,100 + Psyr_4052 0.57 +0.7
4,835,101 - Psyr_4052 0.57 -0.7
4,835,101 - Psyr_4052 0.57 -0.6
4,835,101 - Psyr_4052 0.57 -0.2
4,835,101 - Psyr_4052 0.57 -0.6
4,835,101 - Psyr_4052 0.57 +0.5
4,835,101 - Psyr_4052 0.57 -0.2
4,835,101 - Psyr_4052 0.57 +2.1
4,835,101 - Psyr_4052 0.57 -0.5
4,835,101 - Psyr_4052 0.57 +1.4
4,835,101 - Psyr_4052 0.57 -1.0
4,835,135 - Psyr_4052 0.60 -0.3
4,835,135 - Psyr_4052 0.60 -0.4
4,835,278 + Psyr_4052 0.72 -0.4
4,835,558 + +0.3
4,835,559 - -0.6
4,835,598 - +1.8
4,835,612 + -1.4
4,835,612 + +2.6
4,835,613 - +2.4
4,835,625 + +0.5
4,835,637 - -1.0
4,835,752 - Psyr_4053 0.12 +0.6
4,835,752 - Psyr_4053 0.12 -0.4
4,835,752 - Psyr_4053 0.12 -0.9
4,835,752 - Psyr_4053 0.12 +1.6
4,835,752 - Psyr_4053 0.12 +2.1
4,835,752 - Psyr_4053 0.12 +1.1
4,835,754 + Psyr_4053 0.12 +2.4
4,835,754 + Psyr_4053 0.12 +0.4
4,835,754 + Psyr_4053 0.12 +1.0
4,835,754 + Psyr_4053 0.12 +0.3
4,835,754 + Psyr_4053 0.12 -0.4
4,835,755 - Psyr_4053 0.12 -0.8
4,835,755 - Psyr_4053 0.12 +0.0
4,835,755 - Psyr_4053 0.12 -0.9
4,835,861 - Psyr_4053 0.22 +1.4
4,835,955 + Psyr_4053 0.31 +0.5
4,836,043 + Psyr_4053 0.40 -1.1
4,836,043 + Psyr_4053 0.40 +1.4
4,836,044 - Psyr_4053 0.40 +0.8
4,836,044 - Psyr_4053 0.40 +1.8
4,836,159 + Psyr_4053 0.51 +0.9
4,836,159 + Psyr_4053 0.51 -0.2
4,836,160 - Psyr_4053 0.51 +1.7
4,836,292 + Psyr_4053 0.63 -0.7
4,836,292 + Psyr_4053 0.63 +0.2
4,836,292 + Psyr_4053 0.63 -0.5
4,836,292 + Psyr_4053 0.63 -0.4
4,836,293 - Psyr_4053 0.63 +0.4
4,836,293 - Psyr_4053 0.63 -0.4
4,836,293 - Psyr_4053 0.63 +0.1
4,836,293 - Psyr_4053 0.63 +1.4
4,836,293 - Psyr_4053 0.63 +0.0
4,836,293 - Psyr_4053 0.63 +0.4
4,836,293 - Psyr_4053 0.63 -0.4
4,836,293 - Psyr_4053 0.63 -0.5
4,836,293 - Psyr_4053 0.63 -0.6
4,836,363 + Psyr_4053 0.70 +0.2
4,836,364 - Psyr_4053 0.70 +0.8
4,836,364 - Psyr_4053 0.70 -1.0
4,836,364 - Psyr_4053 0.70 -0.5
4,836,364 - Psyr_4053 0.70 +0.8
4,836,364 - Psyr_4053 0.70 -0.1
4,836,471 + Psyr_4053 0.80 +0.8
4,836,471 + Psyr_4053 0.80 -0.8
4,836,472 - Psyr_4053 0.80 -0.1
4,836,472 - Psyr_4053 0.80 +0.5
4,836,472 - Psyr_4053 0.80 -1.2
4,836,472 - Psyr_4053 0.80 +0.2
4,836,473 + Psyr_4053 0.80 +0.8
4,836,474 - Psyr_4053 0.81 -0.3
4,836,558 + Psyr_4053 0.89 +0.1
4,836,558 + Psyr_4053 0.89 +0.0
4,836,558 + Psyr_4053 0.89 +0.8
4,836,558 + Psyr_4053 0.89 +0.6
4,836,559 - Psyr_4053 0.89 +0.1
4,836,559 - Psyr_4053 0.89 -0.8
4,836,559 - Psyr_4053 0.89 +0.3
4,836,559 - Psyr_4053 0.89 +0.6
4,836,559 - Psyr_4053 0.89 +0.0
4,836,559 - Psyr_4053 0.89 +3.4

Or see this region's nucleotide sequence