Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3867

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
4,606,072	+		Psyr_3865	0.38	+0.8
4,606,072	+		Psyr_3865	0.38	-0.6
4,606,072	+		Psyr_3865	0.38	-1.2
4,606,072	+		Psyr_3865	0.38	+0.3
4,606,072	+		Psyr_3865	0.38	-0.1
4,606,072	+		Psyr_3865	0.38	-0.0
4,606,072	+		Psyr_3865	0.38	-0.0
4,606,072	+		Psyr_3865	0.38	+0.0
4,606,073	-		Psyr_3865	0.38	+0.8
4,606,073	-		Psyr_3865	0.38	-0.1
4,606,073	-		Psyr_3865	0.38	+0.0
4,606,073	-		Psyr_3865	0.38	-0.1
4,606,073	-		Psyr_3865	0.38	+0.2
4,606,073	-		Psyr_3865	0.38	-0.6
4,606,073	-		Psyr_3865	0.38	+0.1
4,606,073	-		Psyr_3865	0.38	+0.9
4,606,111	-		Psyr_3865	0.45	+0.4
4,606,350	+		Psyr_3865	0.89	-1.0
4,606,428	+				-0.6
4,606,429	-				-0.7
4,606,429	-				-0.4
4,606,429	-				+1.9
4,606,429	-				-0.0
4,606,440	+				+0.4
4,606,441	-				-1.7
4,606,454	-				-1.2
4,606,501	+				+1.5
4,606,550	+				+0.0
4,606,551	-				-0.2
4,606,551	-				-1.2
4,606,561	+				-0.1
4,606,561	+				+1.1
4,606,562	-				-0.2
4,606,562	-				+0.4
4,606,562	-				-1.1
4,606,695	+		Psyr_3866	0.34	-1.3
4,606,695	+		Psyr_3866	0.34	-0.4
4,606,695	+		Psyr_3866	0.34	-1.5
4,606,695	+		Psyr_3866	0.34	+0.8
4,606,696	-		Psyr_3866	0.34	+0.6
4,606,696	-		Psyr_3866	0.34	+0.4
4,606,749	+		Psyr_3866	0.45	+2.4
4,606,749	+		Psyr_3866	0.45	+0.4
4,606,750	-		Psyr_3866	0.45	+0.1
4,606,750	-		Psyr_3866	0.45	+0.2
4,606,750	-		Psyr_3866	0.45	-0.6
4,606,875	+		Psyr_3866	0.70	-2.4
4,606,875	+		Psyr_3866	0.70	-3.1
4,606,875	+		Psyr_3866	0.70	+0.8
4,606,875	+		Psyr_3866	0.70	-0.9
4,606,875	+		Psyr_3866	0.70	-1.1
4,606,876	-		Psyr_3866	0.70	-0.7
4,606,876	-		Psyr_3866	0.70	-0.2
4,606,876	-		Psyr_3866	0.70	+0.5
4,606,876	-		Psyr_3866	0.70	+2.1
4,606,876	-		Psyr_3866	0.70	-0.2
4,607,027	-				+0.1
4,607,027	-				-0.8
4,607,027	-				-0.0
4,607,027	-				-1.9
4,607,276	+		Psyr_3867	0.74	-0.6
4,607,277	-		Psyr_3867	0.75	-1.2
4,607,317	-		Psyr_3867	0.87	-0.6
4,607,354	+				-1.3
4,607,354	+				-0.5
4,607,384	+				+0.4
4,607,384	+				+0.1
4,607,384	+				-0.7
4,607,384	+				-0.2
4,607,565	-				-0.2
4,607,565	-				+1.0
4,607,784	+				-0.4
4,607,784	+				+0.1
4,607,846	+				-1.5
4,607,846	+				+1.2
4,607,846	+				-0.5
4,607,847	-				+1.1
4,607,847	-				-2.2
4,607,929	+				+0.2
4,607,929	+				+0.4
4,607,929	+				+0.2
4,607,998	+		Psyr_3869	0.11	-0.2
4,608,223	+		Psyr_3869	0.45	-0.3
4,608,223	+		Psyr_3869	0.45	+0.5
4,608,223	+		Psyr_3869	0.45	-0.6
4,608,224	-		Psyr_3869	0.45	-1.7
4,608,238	+		Psyr_3869	0.47	+1.0
4,608,262	+		Psyr_3869	0.51	+0.0