Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3795

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3794 and Psyr_3795 are separated by 118 nucleotidesPsyr_3795 and Psyr_3796 are separated by 19 nucleotides Psyr_3794: Psyr_3794 - surface antigen (D15):Surface antigen variable number, at 4,510,450 to 4,512,822 _3794 Psyr_3795: Psyr_3795 - hypothetical protein, at 4,512,941 to 4,513,354 _3795 Psyr_3796: Psyr_3796 - transcriptional regulator, LysR family, at 4,513,374 to 4,514,273 _3796 Position (kb) 4512 4513 4514Strain fitness (log2 ratio) -2 -1 0 1 2at 4511.944 kb on + strand, within Psyr_3794at 4511.944 kb on + strand, within Psyr_3794at 4511.944 kb on + strand, within Psyr_3794at 4511.945 kb on - strand, within Psyr_3794at 4511.945 kb on - strand, within Psyr_3794at 4511.947 kb on + strand, within Psyr_3794at 4511.948 kb on - strand, within Psyr_3794at 4511.948 kb on - strand, within Psyr_3794at 4511.971 kb on + strand, within Psyr_3794at 4511.971 kb on + strand, within Psyr_3794at 4511.972 kb on - strand, within Psyr_3794at 4511.974 kb on + strand, within Psyr_3794at 4511.975 kb on - strand, within Psyr_3794at 4511.975 kb on - strand, within Psyr_3794at 4511.975 kb on - strand, within Psyr_3794at 4512.043 kb on + strand, within Psyr_3794at 4512.085 kb on + strand, within Psyr_3794at 4512.085 kb on + strand, within Psyr_3794at 4512.085 kb on + strand, within Psyr_3794at 4512.085 kb on + strand, within Psyr_3794at 4512.103 kb on + strand, within Psyr_3794at 4512.103 kb on + strand, within Psyr_3794at 4512.103 kb on + strand, within Psyr_3794at 4512.104 kb on - strand, within Psyr_3794at 4512.104 kb on - strand, within Psyr_3794at 4512.271 kb on + strand, within Psyr_3794at 4512.271 kb on + strand, within Psyr_3794at 4512.271 kb on + strand, within Psyr_3794at 4512.271 kb on + strand, within Psyr_3794at 4512.272 kb on - strand, within Psyr_3794at 4512.272 kb on - strand, within Psyr_3794at 4512.274 kb on - strand, within Psyr_3794at 4512.324 kb on + strand, within Psyr_3794at 4512.325 kb on - strand, within Psyr_3794at 4512.325 kb on - strand, within Psyr_3794at 4512.338 kb on - strand, within Psyr_3794at 4512.377 kb on - strand, within Psyr_3794at 4512.385 kb on + strand, within Psyr_3794at 4512.385 kb on + strand, within Psyr_3794at 4512.386 kb on - strand, within Psyr_3794at 4512.386 kb on - strand, within Psyr_3794at 4512.466 kb on + strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.467 kb on - strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.487 kb on + strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.488 kb on - strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.550 kb on + strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.551 kb on - strand, within Psyr_3794at 4512.626 kb on - strandat 4512.834 kb on + strandat 4512.834 kb on + strandat 4512.866 kb on + strandat 4512.866 kb on + strandat 4512.866 kb on + strandat 4512.867 kb on - strandat 4512.867 kb on - strandat 4512.867 kb on - strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.887 kb on + strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.888 kb on - strandat 4512.917 kb on - strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.938 kb on + strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4512.939 kb on - strandat 4513.185 kb on + strand, within Psyr_3795at 4513.186 kb on - strand, within Psyr_3795at 4513.186 kb on - strand, within Psyr_3795at 4513.320 kb on + strandat 4513.321 kb on - strandat 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4513.756 kb on + strand, within Psyr_3796at 4514.253 kb on - strandat 4514.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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4,511,944 + Psyr_3794 0.63 +0.5
4,511,944 + Psyr_3794 0.63 -2.1
4,511,944 + Psyr_3794 0.63 +0.3
4,511,945 - Psyr_3794 0.63 -0.9
4,511,945 - Psyr_3794 0.63 -0.9
4,511,947 + Psyr_3794 0.63 +0.3
4,511,948 - Psyr_3794 0.63 +0.2
4,511,948 - Psyr_3794 0.63 +1.7
4,511,971 + Psyr_3794 0.64 +0.3
4,511,971 + Psyr_3794 0.64 -0.8
4,511,972 - Psyr_3794 0.64 -1.2
4,511,974 + Psyr_3794 0.64 +0.5
4,511,975 - Psyr_3794 0.64 +1.1
4,511,975 - Psyr_3794 0.64 +0.2
4,511,975 - Psyr_3794 0.64 +0.1
4,512,043 + Psyr_3794 0.67 -1.5
4,512,085 + Psyr_3794 0.69 -0.7
4,512,085 + Psyr_3794 0.69 -0.7
4,512,085 + Psyr_3794 0.69 +0.4
4,512,085 + Psyr_3794 0.69 -1.2
4,512,103 + Psyr_3794 0.70 -0.9
4,512,103 + Psyr_3794 0.70 +0.7
4,512,103 + Psyr_3794 0.70 -1.3
4,512,104 - Psyr_3794 0.70 +0.7
4,512,104 - Psyr_3794 0.70 -0.3
4,512,271 + Psyr_3794 0.77 -0.4
4,512,271 + Psyr_3794 0.77 +1.2
4,512,271 + Psyr_3794 0.77 -0.3
4,512,271 + Psyr_3794 0.77 +0.7
4,512,272 - Psyr_3794 0.77 -0.5
4,512,272 - Psyr_3794 0.77 -1.1
4,512,274 - Psyr_3794 0.77 -0.5
4,512,324 + Psyr_3794 0.79 +0.1
4,512,325 - Psyr_3794 0.79 -0.5
4,512,325 - Psyr_3794 0.79 -0.4
4,512,338 - Psyr_3794 0.80 +0.7
4,512,377 - Psyr_3794 0.81 +0.5
4,512,385 + Psyr_3794 0.82 +0.5
4,512,385 + Psyr_3794 0.82 -0.3
4,512,386 - Psyr_3794 0.82 +1.0
4,512,386 - Psyr_3794 0.82 +0.9
4,512,466 + Psyr_3794 0.85 +1.1
4,512,467 - Psyr_3794 0.85 +1.0
4,512,467 - Psyr_3794 0.85 -1.4
4,512,467 - Psyr_3794 0.85 -0.6
4,512,487 + Psyr_3794 0.86 -1.3
4,512,487 + Psyr_3794 0.86 -0.4
4,512,487 + Psyr_3794 0.86 +1.7
4,512,487 + Psyr_3794 0.86 +0.1
4,512,487 + Psyr_3794 0.86 +2.3
4,512,487 + Psyr_3794 0.86 +0.9
4,512,488 - Psyr_3794 0.86 +1.5
4,512,488 - Psyr_3794 0.86 +1.1
4,512,488 - Psyr_3794 0.86 +0.8
4,512,488 - Psyr_3794 0.86 +0.7
4,512,488 - Psyr_3794 0.86 +2.3
4,512,488 - Psyr_3794 0.86 +0.7
4,512,488 - Psyr_3794 0.86 -0.6
4,512,488 - Psyr_3794 0.86 +1.3
4,512,488 - Psyr_3794 0.86 +2.3
4,512,488 - Psyr_3794 0.86 +0.1
4,512,488 - Psyr_3794 0.86 -1.1
4,512,488 - Psyr_3794 0.86 -1.4
4,512,550 + Psyr_3794 0.88 +0.4
4,512,550 + Psyr_3794 0.88 -0.7
4,512,550 + Psyr_3794 0.88 -1.0
4,512,550 + Psyr_3794 0.88 -0.5
4,512,550 + Psyr_3794 0.88 +0.5
4,512,550 + Psyr_3794 0.88 -1.1
4,512,551 - Psyr_3794 0.89 -0.7
4,512,551 - Psyr_3794 0.89 +0.0
4,512,551 - Psyr_3794 0.89 +0.6
4,512,551 - Psyr_3794 0.89 -0.5
4,512,551 - Psyr_3794 0.89 +0.4
4,512,551 - Psyr_3794 0.89 +0.6
4,512,551 - Psyr_3794 0.89 +0.3
4,512,551 - Psyr_3794 0.89 +1.5
4,512,626 - +0.5
4,512,834 + -0.3
4,512,834 + -0.1
4,512,866 + -0.7
4,512,866 + -0.5
4,512,866 + -0.9
4,512,867 - +0.3
4,512,867 - +0.2
4,512,867 - +0.1
4,512,887 + -0.7
4,512,887 + +2.7
4,512,887 + -1.3
4,512,887 + -0.7
4,512,887 + -1.4
4,512,888 - -0.3
4,512,888 - +0.7
4,512,888 - +0.8
4,512,888 - -0.9
4,512,888 - -0.3
4,512,888 - -0.3
4,512,917 - +1.0
4,512,938 + -0.6
4,512,938 + -0.5
4,512,938 + -0.8
4,512,938 + +0.7
4,512,938 + +0.4
4,512,938 + -0.1
4,512,939 - -0.0
4,512,939 - -0.8
4,512,939 - -0.2
4,512,939 - -0.7
4,512,939 - -0.0
4,512,939 - +0.1
4,512,939 - +0.5
4,513,185 + Psyr_3795 0.59 -0.1
4,513,186 - Psyr_3795 0.59 -1.8
4,513,186 - Psyr_3795 0.59 -1.4
4,513,320 + -0.7
4,513,321 - -0.8
4,513,756 + Psyr_3796 0.42 -0.8
4,513,756 + Psyr_3796 0.42 -0.1
4,513,756 + Psyr_3796 0.42 +0.6
4,514,253 - +0.2
4,514,253 - -0.3

Or see this region's nucleotide sequence