Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3783

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
4,499,198	+		Psyr_3781	0.62	+2.1
4,499,198	+		Psyr_3781	0.62	+0.1
4,499,199	-		Psyr_3781	0.62	+0.4
4,499,199	-		Psyr_3781	0.62	+0.3
4,499,199	-		Psyr_3781	0.62	-1.4
4,499,456	+		Psyr_3781	0.89	+0.3
4,499,474	+				-0.9
4,499,474	+				-0.5
4,499,474	+				-0.7
4,499,474	+				+0.2
4,499,474	+				+2.3
4,499,474	+				-0.9
4,499,475	-				-1.6
4,499,475	-				-0.1
4,499,475	-				+0.2
4,499,475	-				+1.5
4,499,475	-				-0.2
4,499,475	-				-0.3
4,499,475	-				-0.9
4,499,475	-				+0.6
4,499,475	-				+0.3
4,499,596	+				-0.0
4,499,596	+				-0.7
4,499,596	+				-0.0
4,499,597	-				+0.1
4,499,597	-				-1.1
4,499,597	-				+0.0
4,499,597	-				+0.2
4,499,597	-				-0.6
4,499,620	+				+0.4
4,499,620	+				+0.3
4,499,620	+				-1.9
4,499,620	+				+0.2
4,499,620	+				+2.3
4,499,620	+				+1.4
4,499,620	+				-0.3
4,499,620	+				-0.8
4,499,620	+				+2.3
4,499,620	+				+0.7
4,499,620	+				+0.7
4,499,621	-				+0.5
4,499,621	-				-0.6
4,499,621	-				+0.3
4,499,621	-				+0.1
4,499,621	-				-0.3
4,499,621	-				+0.7
4,499,621	-				-1.1
4,499,718	-				+0.5
4,499,747	+				+0.5
4,499,831	+		Psyr_3782	0.23	-1.0
4,499,831	+		Psyr_3782	0.23	+0.7
4,499,864	+		Psyr_3782	0.41	+1.0
4,499,864	+		Psyr_3782	0.41	+0.1
4,499,865	-		Psyr_3782	0.41	+0.4
4,499,865	-		Psyr_3782	0.41	+0.2
4,499,948	-		Psyr_3782	0.84	+0.3
4,500,067	+				+1.1
4,500,067	+				-1.2
4,500,336	-		Psyr_3783	0.38	-1.7
4,500,343	+		Psyr_3783	0.40	-0.9
4,500,344	-		Psyr_3783	0.40	+0.1
4,500,344	-		Psyr_3783	0.40	-0.3
4,500,413	+		Psyr_3783	0.59	+0.2
4,500,414	-		Psyr_3783	0.59	-1.7
4,500,569	-				-0.6
4,500,778	+		Psyr_3784	0.32	-1.1
4,500,778	+		Psyr_3784	0.32	-1.5
4,500,778	+		Psyr_3784	0.32	+0.8
4,500,778	+		Psyr_3784	0.32	+0.4
4,500,778	+		Psyr_3784	0.32	+0.3
4,500,778	+		Psyr_3784	0.32	-2.1
4,500,887	-		Psyr_3784	0.59	-1.4
4,500,887	-		Psyr_3784	0.59	+0.0
4,500,918	+		Psyr_3784	0.67	+0.3
4,500,919	-		Psyr_3784	0.67	+0.1
4,500,958	+		Psyr_3784	0.77	+0.5
4,500,958	+		Psyr_3784	0.77	+0.9
4,501,027	+				-0.1
4,501,027	+				+1.7
4,501,028	-				+0.5
4,501,039	-				+0.9
4,501,097	+				-1.5
4,501,098	-				-0.4
4,501,098	-				+0.2
4,501,098	-				-2.1
4,501,113	+				-0.1
4,501,144	+				-0.1
4,501,145	-				+0.2
4,501,145	-				-0.3
4,501,145	-				+0.2
4,501,219	+				-2.0
4,501,219	+				+1.0
4,501,219	+				-0.2
4,501,219	+				-0.6
4,501,219	+				-0.5
4,501,219	+				+0.2
4,501,220	-				+0.3
4,501,220	-				+0.0
4,501,220	-				+2.1
4,501,220	-				-0.7
4,501,220	-				+0.0
4,501,220	-				-0.3
4,501,220	-				-0.3
4,501,236	+				+0.1
4,501,236	+				-0.3
4,501,237	-				+1.3
4,501,237	-				-0.1
4,501,254	+				+2.3
4,501,293	+		Psyr_3785	0.16	-0.5
4,501,293	+		Psyr_3785	0.16	-0.4
4,501,294	-		Psyr_3785	0.16	+0.1
4,501,294	-		Psyr_3785	0.16	-0.1
4,501,374	+		Psyr_3785	0.28	+0.7
4,501,374	+		Psyr_3785	0.28	+1.2
4,501,403	-		Psyr_3785	0.33	+0.4
4,501,562	+		Psyr_3785	0.58	-0.1
4,501,563	-		Psyr_3785	0.58	-1.4