Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3514 and Psyr_3515 are separated by 255 nucleotides Psyr_3515 and Psyr_3516 are separated by 23 nucleotides
Psyr_3514: Psyr_3514 - delta-1-piperideine-6-carboxylate dehydrogenase, at 4,189,297 to 4,190,787
_3514
Psyr_3515: Psyr_3515 - 4-aminobutyrate aminotransferase apoenzyme, at 4,191,043 to 4,192,290
_3515
Psyr_3516: Psyr_3516 - Protein of unknown function DUF1338, at 4,192,314 to 4,193,705
_3516
Position (kb) 4191
4192
4193 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4190.429 kb on + strand, within Psyr_3514 at 4190.430 kb on - strand, within Psyr_3514 at 4190.430 kb on - strand, within Psyr_3514 at 4190.430 kb on - strand, within Psyr_3514 at 4190.551 kb on - strand, within Psyr_3514 at 4190.551 kb on - strand, within Psyr_3514 at 4190.551 kb on - strand, within Psyr_3514 at 4190.551 kb on - strand, within Psyr_3514 at 4190.563 kb on + strand, within Psyr_3514 at 4190.563 kb on + strand, within Psyr_3514 at 4190.563 kb on + strand, within Psyr_3514 at 4190.564 kb on - strand, within Psyr_3514 at 4190.564 kb on - strand, within Psyr_3514 at 4190.564 kb on - strand, within Psyr_3514 at 4190.657 kb on - strand at 4190.718 kb on - strand at 4190.770 kb on + strand at 4190.770 kb on + strand at 4190.773 kb on + strand at 4190.773 kb on + strand at 4190.773 kb on + strand at 4190.838 kb on - strand at 4190.860 kb on + strand at 4190.915 kb on + strand at 4190.915 kb on + strand at 4190.915 kb on + strand at 4190.935 kb on - strand at 4191.139 kb on + strand at 4191.140 kb on - strand at 4191.140 kb on - strand at 4191.140 kb on - strand at 4191.268 kb on + strand, within Psyr_3515 at 4191.268 kb on + strand, within Psyr_3515 at 4191.269 kb on - strand, within Psyr_3515 at 4191.269 kb on - strand, within Psyr_3515 at 4191.476 kb on - strand, within Psyr_3515 at 4191.478 kb on - strand, within Psyr_3515 at 4191.904 kb on + strand, within Psyr_3515 at 4191.904 kb on + strand, within Psyr_3515 at 4191.905 kb on - strand, within Psyr_3515 at 4191.905 kb on - strand, within Psyr_3515 at 4191.905 kb on - strand, within Psyr_3515 at 4191.905 kb on - strand, within Psyr_3515 at 4191.905 kb on - strand, within Psyr_3515 at 4192.048 kb on + strand, within Psyr_3515 at 4192.257 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.383 kb on + strand at 4192.384 kb on - strand at 4192.384 kb on - strand at 4192.384 kb on - strand at 4192.404 kb on + strand at 4192.404 kb on + strand at 4192.605 kb on + strand, within Psyr_3516 at 4192.606 kb on - strand, within Psyr_3516 at 4192.608 kb on + strand, within Psyr_3516 at 4192.609 kb on - strand, within Psyr_3516 at 4192.609 kb on - strand, within Psyr_3516 at 4192.778 kb on + strand, within Psyr_3516 at 4192.779 kb on - strand, within Psyr_3516 at 4192.921 kb on - strand, within Psyr_3516 at 4193.244 kb on + strand, within Psyr_3516 at 4193.245 kb on - strand, within Psyr_3516 at 4193.245 kb on - strand, within Psyr_3516
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 4,190,429 + Psyr_3514 0.76 -0.6 4,190,430 - Psyr_3514 0.76 -0.4 4,190,430 - Psyr_3514 0.76 -0.3 4,190,430 - Psyr_3514 0.76 +0.3 4,190,551 - Psyr_3514 0.84 -0.1 4,190,551 - Psyr_3514 0.84 -0.6 4,190,551 - Psyr_3514 0.84 +0.3 4,190,551 - Psyr_3514 0.84 +0.3 4,190,563 + Psyr_3514 0.85 -0.9 4,190,563 + Psyr_3514 0.85 -0.3 4,190,563 + Psyr_3514 0.85 +0.9 4,190,564 - Psyr_3514 0.85 -0.3 4,190,564 - Psyr_3514 0.85 +1.0 4,190,564 - Psyr_3514 0.85 -0.0 4,190,657 - +0.7 4,190,718 - -0.5 4,190,770 + +0.3 4,190,770 + -1.8 4,190,773 + +2.3 4,190,773 + +0.7 4,190,773 + +0.8 4,190,838 - -0.7 4,190,860 + +0.8 4,190,915 + +1.0 4,190,915 + -0.3 4,190,915 + -0.1 4,190,935 - +0.2 4,191,139 + +0.7 4,191,140 - -0.3 4,191,140 - +0.2 4,191,140 - +0.7 4,191,268 + Psyr_3515 0.18 +4.1 4,191,268 + Psyr_3515 0.18 +0.6 4,191,269 - Psyr_3515 0.18 +0.3 4,191,269 - Psyr_3515 0.18 +0.4 4,191,476 - Psyr_3515 0.35 +0.7 4,191,478 - Psyr_3515 0.35 +0.4 4,191,904 + Psyr_3515 0.69 +0.3 4,191,904 + Psyr_3515 0.69 -0.3 4,191,905 - Psyr_3515 0.69 +0.3 4,191,905 - Psyr_3515 0.69 -0.4 4,191,905 - Psyr_3515 0.69 -0.2 4,191,905 - Psyr_3515 0.69 +1.3 4,191,905 - Psyr_3515 0.69 -0.3 4,192,048 + Psyr_3515 0.81 -0.3 4,192,257 + -0.5 4,192,383 + +1.4 4,192,383 + +0.0 4,192,383 + +1.7 4,192,383 + -0.7 4,192,383 + -1.3 4,192,383 + -1.7 4,192,383 + +0.5 4,192,383 + -0.2 4,192,384 - +0.0 4,192,384 - +1.3 4,192,384 - +0.0 4,192,404 + -0.3 4,192,404 + +0.5 4,192,605 + Psyr_3516 0.21 -0.7 4,192,606 - Psyr_3516 0.21 -0.4 4,192,608 + Psyr_3516 0.21 +0.3 4,192,609 - Psyr_3516 0.21 +1.3 4,192,609 - Psyr_3516 0.21 +0.4 4,192,778 + Psyr_3516 0.33 +0.0 4,192,779 - Psyr_3516 0.33 +1.4 4,192,921 - Psyr_3516 0.44 -0.7 4,193,244 + Psyr_3516 0.67 -0.8 4,193,245 - Psyr_3516 0.67 +1.0 4,193,245 - Psyr_3516 0.67 +0.5
Or see this region's nucleotide sequence