Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3228

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3227 and Psyr_3228 overlap by 4 nucleotidesPsyr_3228 and Psyr_3229 are separated by 104 nucleotides Psyr_3227: Psyr_3227 - Glycosyl transferase, family 2, at 3,865,334 to 3,866,335 _3227 Psyr_3228: Psyr_3228 - Glycosyl transferase, group 1, at 3,866,332 to 3,867,537 _3228 Psyr_3229: Psyr_3229 - Glycosyl transferase, group 1, at 3,867,642 to 3,868,757 _3229 Position (kb) 3866 3867 3868Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.367 kb on + strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.368 kb on - strandat 3865.385 kb on + strandat 3865.385 kb on + strandat 3865.392 kb on - strandat 3865.555 kb on - strand, within Psyr_3227at 3865.594 kb on - strand, within Psyr_3227at 3865.594 kb on - strand, within Psyr_3227at 3865.641 kb on + strand, within Psyr_3227at 3865.641 kb on + strand, within Psyr_3227at 3865.962 kb on - strand, within Psyr_3227at 3865.962 kb on - strand, within Psyr_3227at 3865.962 kb on - strand, within Psyr_3227at 3865.962 kb on - strand, within Psyr_3227at 3865.980 kb on - strand, within Psyr_3227at 3866.088 kb on - strand, within Psyr_3227at 3866.088 kb on - strand, within Psyr_3227at 3866.097 kb on - strand, within Psyr_3227at 3866.126 kb on + strand, within Psyr_3227at 3866.127 kb on - strand, within Psyr_3227at 3866.231 kb on + strand, within Psyr_3227at 3866.231 kb on + strand, within Psyr_3227at 3866.232 kb on - strand, within Psyr_3227at 3866.359 kb on + strandat 3866.404 kb on - strandat 3866.593 kb on + strand, within Psyr_3228at 3866.593 kb on + strand, within Psyr_3228at 3866.614 kb on + strand, within Psyr_3228at 3866.746 kb on + strand, within Psyr_3228at 3866.746 kb on + strand, within Psyr_3228at 3866.912 kb on - strand, within Psyr_3228at 3866.912 kb on - strand, within Psyr_3228at 3866.932 kb on + strand, within Psyr_3228at 3866.933 kb on - strand, within Psyr_3228at 3866.933 kb on - strand, within Psyr_3228at 3867.019 kb on + strand, within Psyr_3228at 3867.536 kb on - strandat 3867.536 kb on - strandat 3867.689 kb on - strandat 3867.746 kb on - strandat 3867.761 kb on + strand, within Psyr_3229at 3867.856 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.916 kb on - strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strandat 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.951 kb on + strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.952 kb on - strand, within Psyr_3229at 3867.972 kb on + strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3867.973 kb on - strand, within Psyr_3229at 3868.073 kb on - strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.083 kb on + strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.084 kb on - strand, within Psyr_3229at 3868.386 kb on + strand, within Psyr_3229at 3868.422 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229at 3868.527 kb on + strand, within Psyr_3229

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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3,865,367 + -0.2
3,865,367 + +0.9
3,865,367 + +0.3
3,865,367 + +0.4
3,865,367 + +2.0
3,865,368 - +2.0
3,865,368 - +0.6
3,865,368 - +0.4
3,865,368 - -0.8
3,865,368 - +0.1
3,865,368 - +0.9
3,865,368 - +1.0
3,865,385 + -0.6
3,865,385 + +0.6
3,865,392 - +0.4
3,865,555 - Psyr_3227 0.22 -2.4
3,865,594 - Psyr_3227 0.26 +0.4
3,865,594 - Psyr_3227 0.26 -1.1
3,865,641 + Psyr_3227 0.31 +1.8
3,865,641 + Psyr_3227 0.31 +0.4
3,865,962 - Psyr_3227 0.63 +0.7
3,865,962 - Psyr_3227 0.63 -0.0
3,865,962 - Psyr_3227 0.63 -1.6
3,865,962 - Psyr_3227 0.63 +2.1
3,865,980 - Psyr_3227 0.64 +0.7
3,866,088 - Psyr_3227 0.75 +1.0
3,866,088 - Psyr_3227 0.75 +2.4
3,866,097 - Psyr_3227 0.76 +2.0
3,866,126 + Psyr_3227 0.79 +1.7
3,866,127 - Psyr_3227 0.79 +0.1
3,866,231 + Psyr_3227 0.90 +1.1
3,866,231 + Psyr_3227 0.90 +0.4
3,866,232 - Psyr_3227 0.90 -1.3
3,866,359 + +2.8
3,866,404 - +0.3
3,866,593 + Psyr_3228 0.22 +0.4
3,866,593 + Psyr_3228 0.22 +1.0
3,866,614 + Psyr_3228 0.23 +1.3
3,866,746 + Psyr_3228 0.34 +0.6
3,866,746 + Psyr_3228 0.34 +0.7
3,866,912 - Psyr_3228 0.48 +1.1
3,866,912 - Psyr_3228 0.48 +0.1
3,866,932 + Psyr_3228 0.50 -0.3
3,866,933 - Psyr_3228 0.50 +0.7
3,866,933 - Psyr_3228 0.50 +2.8
3,867,019 + Psyr_3228 0.57 +0.2
3,867,536 - -0.4
3,867,536 - +1.1
3,867,689 - -0.4
3,867,746 - -0.9
3,867,761 + Psyr_3229 0.11 +0.4
3,867,856 - Psyr_3229 0.19 +0.3
3,867,916 - Psyr_3229 0.25 +0.3
3,867,916 - Psyr_3229 0.25 +0.3
3,867,951 + Psyr_3229 0.28 -1.1
3,867,951 + Psyr_3229 0.28 +1.4
3,867,951 + Psyr_3229 0.28 +0.2
3,867,951 + Psyr_3229 0.28 -0.1
3,867,951 + +2.4
3,867,951 + Psyr_3229 0.28 -0.0
3,867,951 + Psyr_3229 0.28 +0.4
3,867,951 + Psyr_3229 0.28 -0.4
3,867,951 + Psyr_3229 0.28 -0.1
3,867,952 - Psyr_3229 0.28 -0.1
3,867,952 - Psyr_3229 0.28 +1.0
3,867,952 - Psyr_3229 0.28 +1.0
3,867,952 - Psyr_3229 0.28 +1.3
3,867,952 - Psyr_3229 0.28 +1.4
3,867,952 - Psyr_3229 0.28 -1.6
3,867,952 - Psyr_3229 0.28 +0.4
3,867,972 + Psyr_3229 0.30 +0.4
3,867,973 - Psyr_3229 0.30 +0.4
3,867,973 - Psyr_3229 0.30 -0.6
3,867,973 - Psyr_3229 0.30 -0.0
3,868,073 - Psyr_3229 0.39 +0.3
3,868,083 + Psyr_3229 0.40 -0.6
3,868,083 + Psyr_3229 0.40 +0.3
3,868,083 + Psyr_3229 0.40 -0.1
3,868,084 - Psyr_3229 0.40 -0.6
3,868,084 - Psyr_3229 0.40 +0.6
3,868,386 + Psyr_3229 0.67 +0.4
3,868,422 + Psyr_3229 0.70 +0.1
3,868,527 + Psyr_3229 0.79 +1.1
3,868,527 + Psyr_3229 0.79 -1.9

Or see this region's nucleotide sequence