Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3221

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
3,857,471	+		Psyr_3220	0.74	-0.0
3,857,471	+		Psyr_3220	0.74	+2.8
3,857,472	-		Psyr_3220	0.74	-0.2
3,857,756	-				-0.8
3,857,764	+				+0.0
3,857,765	-				-2.1
3,857,951	+				+0.8
3,857,951	+				+0.2
3,857,955	+				-0.9
3,858,068	-				-0.2
3,858,085	-				-1.6
3,858,085	-				+0.1
3,858,086	+				-1.0
3,858,086	+				+1.0
3,858,086	+				+0.3
3,858,086	+				+1.1
3,858,086	+				+0.9
3,858,086	+				+1.8
3,858,086	+				-0.7
3,858,086	+				+0.4
3,858,086	+				+0.4
3,858,087	-				-0.6
3,858,087	-				+1.4
3,858,087	-				-1.4
3,858,088	+				-0.7
3,858,088	+				-1.3
3,858,088	+				-0.0
3,858,088	+				-1.1
3,858,088	+				-0.6
3,858,088	+				+0.1
3,858,088	+				-0.1
3,858,088	+				+2.6
3,858,088	+				-0.9
3,858,089	-				-0.5
3,858,089	-				-1.6
3,858,089	-				-0.4
3,858,089	-				+0.2
3,858,089	-				-1.6
3,858,089	-				-1.1
3,858,188	+				-0.1
3,858,189	-				+1.2
3,858,245	+				-0.6
3,858,328	-				-1.2
3,858,385	+				+0.7
3,858,385	+				+0.2
3,858,385	+				+0.1
3,858,385	+				+1.3
3,858,385	+				+0.9
3,858,386	-				-0.6
3,858,386	-				-2.1
3,858,386	-				-0.5
3,858,386	-				+2.4
3,858,386	-				-1.0
3,858,474	+				-0.2
3,858,475	-				+0.1
3,858,475	-				-1.0
3,858,475	-				-0.6
3,858,475	-				-0.4
3,858,475	-				+0.4
3,858,505	-				-0.3
3,858,505	-				-0.4
3,858,519	+				+1.4
3,858,519	+				+0.6
3,858,519	+				-1.6
3,858,519	+				+1.1
3,858,519	+				+0.3
3,858,519	+				-1.6
3,858,520	-				-1.7
3,858,520	-				+0.4
3,858,520	-				+0.0
3,858,520	-				-0.7
3,858,520	-				-0.3
3,858,520	-				-0.2
3,858,520	-				+0.4
3,858,520	-				-1.3
3,858,585	+		Psyr_3221	0.12	+0.5
3,858,586	-		Psyr_3221	0.12	+1.0
3,858,606	-		Psyr_3221	0.14	-0.4
3,858,797	+		Psyr_3221	0.31	-1.6
3,858,874	+		Psyr_3221	0.38	+0.2
3,858,874	+		Psyr_3221	0.38	-0.6
3,859,213	-		Psyr_3221	0.68	+0.4
3,859,213	-		Psyr_3221	0.68	-0.6
3,859,233	+		Psyr_3221	0.70	+0.0
3,859,234	-		Psyr_3221	0.70	+0.9
3,859,281	+		Psyr_3221	0.74	+1.3
3,859,281	+		Psyr_3221	0.74	+0.7
3,859,282	-		Psyr_3221	0.74	+0.0
3,859,282	-		Psyr_3221	0.74	+1.0
3,859,282	-		Psyr_3221	0.74	+0.3
3,859,282	-		Psyr_3221	0.74	-1.6
3,859,284	+		Psyr_3221	0.74	+1.0
3,859,284	+		Psyr_3221	0.74	-0.6
3,859,372	-		Psyr_3221	0.82	+0.5
3,859,372	-		Psyr_3221	0.82	-1.0
3,859,395	+		Psyr_3221	0.84	+1.4
3,859,395	+		Psyr_3221	0.84	-0.1
3,859,396	-		Psyr_3221	0.84	-2.4
3,859,396	-		Psyr_3221	0.84	+1.6
3,859,464	+				+0.6
3,859,623	-				+0.8
3,859,637	+				+0.8
3,859,637	+				+0.3
3,859,637	+				+0.4
3,859,637	+				+1.4
3,859,637	+				+0.3
3,859,638	-				+0.7
3,859,638	-				+0.1
3,859,638	-				-0.1
3,859,638	-				+2.0
3,859,674	-				+1.0
3,859,674	-				+0.3
3,859,942	-		Psyr_3222	0.24	-1.4
3,860,015	+		Psyr_3222	0.29	+0.5
3,860,015	+		Psyr_3222	0.29	+2.0
3,860,016	-				-0.1
3,860,080	+		Psyr_3222	0.33	+1.4
3,860,369	+		Psyr_3222	0.52	-0.9
3,860,369	+		Psyr_3222	0.52	+2.0
3,860,522	-		Psyr_3222	0.62	+0.7
3,860,522	-		Psyr_3222	0.62	+0.4
3,860,522	-		Psyr_3222	0.62	+0.1
3,860,558	+		Psyr_3222	0.65	+0.2
3,860,559	-		Psyr_3222	0.65	+0.3