Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3198

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
3,827,154	-				-0.5
3,827,332	-				+0.1
3,827,353	+				-0.0
3,827,355	+				+1.4
3,827,356	-				-2.6
3,827,369	+				+0.5
3,827,369	+				+1.4
3,827,371	+				-0.7
3,827,372	-				-0.5
3,827,372	-				-1.6
3,827,392	-				+3.2
3,827,417	+				-0.8
3,827,418	-				+1.7
3,827,464	+				-0.2
3,827,489	+				-1.7
3,827,490	-				-1.2
3,827,490	-				+0.8
3,827,493	+				-0.2
3,827,494	-				+1.8
3,828,045	+		Psyr_3197	0.82	-2.2
3,828,045	+		Psyr_3197	0.82	-1.9
3,828,136	+				-1.2
3,828,137	-				+1.4
3,828,241	+		Psyr_3198	0.16	+0.4
3,828,241	+		Psyr_3198	0.16	+1.4
3,828,241	+		Psyr_3198	0.16	+0.0
3,828,242	-		Psyr_3198	0.17	-1.6
3,828,334	+		Psyr_3198	0.30	-1.4
3,828,334	+		Psyr_3198	0.30	-1.6
3,828,482	-		Psyr_3198	0.52	+1.0
3,828,602	-		Psyr_3198	0.70	-0.6
3,828,766	-				-1.2
3,828,823	+				+0.4
3,828,878	+				-0.6
3,828,900	+				-1.2
3,828,900	+				-1.2
3,828,912	+				+0.4
3,828,912	+				-2.7
3,828,913	-				-1.7
3,829,158	+		Psyr_3199	0.16	-0.2
3,829,158	+		Psyr_3199	0.16	-1.9
3,829,231	+		Psyr_3199	0.20	+0.3
3,829,503	+		Psyr_3199	0.35	-0.6
3,829,504	-		Psyr_3199	0.35	-0.6
3,829,504	-		Psyr_3199	0.35	+0.4
3,829,720	-		Psyr_3199	0.47	-1.6