Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2910

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
3,490,965	-		Psyr_2909	0.72	-1.0
3,490,965	-		Psyr_2909	0.72	-0.2
3,491,087	-		Psyr_2909	0.78	-0.5
3,491,177	+		Psyr_2909	0.81	-0.3
3,491,178	-				+0.6
3,491,178	-				-0.4
3,491,540	+				-0.2
3,491,540	+				+0.2
3,491,541	-				-1.0
3,491,715	-				+0.0
3,491,734	+				-0.1
3,491,734	+				+2.5
3,491,735	-				+2.1
3,491,792	+				-0.6
3,491,793	-				+0.8
3,491,793	-				+0.5
3,492,064	+		Psyr_2910	0.25	-1.7
3,492,122	+		Psyr_2910	0.29	-0.5
3,492,122	+		Psyr_2910	0.29	+0.2
3,492,123	-		Psyr_2910	0.29	-0.9
3,492,162	-		Psyr_2910	0.32	+0.2
3,492,162	-		Psyr_2910	0.32	-0.5
3,492,421	+		Psyr_2910	0.50	-0.7
3,492,422	-		Psyr_2910	0.50	-0.3
3,492,611	+		Psyr_2910	0.64	-0.5
3,492,611	+		Psyr_2910	0.64	+0.5
3,492,611	+		Psyr_2910	0.64	+0.5
3,492,611	+		Psyr_2910	0.64	-0.8
3,492,611	+		Psyr_2910	0.64	-0.4
3,492,611	+		Psyr_2910	0.64	+2.5
3,492,611	+		Psyr_2910	0.64	-0.2
3,492,612	-		Psyr_2910	0.64	-1.3
3,492,612	-		Psyr_2910	0.64	+0.5
3,492,612	-		Psyr_2910	0.64	-1.0
3,492,612	-		Psyr_2910	0.64	+0.5
3,492,836	+				-1.0
3,492,836	+		Psyr_2910	0.80	-1.0
3,492,874	+		Psyr_2910	0.83	+0.7
3,492,875	-		Psyr_2910	0.83	-0.0
3,492,911	+		Psyr_2910	0.85	-0.9
3,492,911	+		Psyr_2910	0.85	-0.6
3,492,912	-		Psyr_2910	0.85	+0.5
3,492,912	-		Psyr_2910	0.85	+1.5
3,492,991	+				-0.5
3,492,991	+				+0.1
3,493,082	+				+0.4
3,493,630	-		Psyr_2911	0.28	-0.2
3,493,704	+		Psyr_2911	0.33	-0.9
3,493,705	-		Psyr_2911	0.33	+0.5
3,493,725	+		Psyr_2911	0.34	+0.8
3,493,725	+		Psyr_2911	0.34	-0.3
3,493,725	+		Psyr_2911	0.34	-0.2
3,493,725	+		Psyr_2911	0.34	-0.6
3,493,729	+		Psyr_2911	0.34	-0.1
3,493,730	-		Psyr_2911	0.35	+0.7
3,493,744	-		Psyr_2911	0.35	+0.5
3,493,990	-		Psyr_2911	0.52	+0.2
3,493,993	-		Psyr_2911	0.52	-0.1
3,493,993	-		Psyr_2911	0.52	+0.7
3,493,993	-		Psyr_2911	0.52	-1.3
3,494,103	+		Psyr_2911	0.59	-0.3