Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2826

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
3,399,315	+		Psyr_2825	0.28	-0.8
3,399,315	+		Psyr_2825	0.28	+2.2
3,399,316	-		Psyr_2825	0.28	-0.7
3,399,316	-		Psyr_2825	0.28	+0.0
3,399,316	-		Psyr_2825	0.28	+1.3
3,399,368	+		Psyr_2825	0.32	+0.1
3,399,405	-		Psyr_2825	0.36	-0.8
3,399,454	+		Psyr_2825	0.40	-2.0
3,399,454	+		Psyr_2825	0.40	+1.6
3,399,455	-		Psyr_2825	0.40	+0.8
3,399,535	+		Psyr_2825	0.47	-1.4
3,399,535	+		Psyr_2825	0.47	-1.3
3,399,535	+		Psyr_2825	0.47	-1.0
3,399,535	+		Psyr_2825	0.47	-0.3
3,399,535	+		Psyr_2825	0.47	-1.4
3,399,535	+		Psyr_2825	0.47	-0.4
3,399,535	+		Psyr_2825	0.47	+0.8
3,399,535	+		Psyr_2825	0.47	-0.1
3,399,535	+		Psyr_2825	0.47	+0.4
3,399,535	+		Psyr_2825	0.47	-0.1
3,399,535	+		Psyr_2825	0.47	+1.8
3,399,535	+		Psyr_2825	0.47	+1.4
3,399,535	+		Psyr_2825	0.47	+0.7
3,399,535	+		Psyr_2825	0.47	-0.8
3,399,535	+		Psyr_2825	0.47	+0.6
3,399,535	+		Psyr_2825	0.47	+1.2
3,399,536	-		Psyr_2825	0.47	-0.8
3,399,536	-		Psyr_2825	0.47	+0.4
3,399,536	-		Psyr_2825	0.47	-0.3
3,399,536	-		Psyr_2825	0.47	+0.4
3,399,536	-		Psyr_2825	0.47	+0.4
3,399,536	-		Psyr_2825	0.47	+0.6
3,399,536	-		Psyr_2825	0.47	-0.9
3,399,536	-		Psyr_2825	0.47	+1.4
3,399,536	-		Psyr_2825	0.47	+1.1
3,399,536	-		Psyr_2825	0.47	-0.4
3,399,536	-		Psyr_2825	0.47	-1.2
3,399,536	-		Psyr_2825	0.47	-0.7
3,399,536	-		Psyr_2825	0.47	-1.2
3,399,565	+		Psyr_2825	0.50	+1.6
3,399,565	+		Psyr_2825	0.50	-0.4
3,399,565	+		Psyr_2825	0.50	-1.0
3,399,565	+		Psyr_2825	0.50	-0.4
3,399,565	+		Psyr_2825	0.50	+0.6
3,399,566	-		Psyr_2825	0.50	+2.1
3,399,566	-		Psyr_2825	0.50	+0.9
3,399,566	-		Psyr_2825	0.50	-0.6
3,399,566	-		Psyr_2825	0.50	+0.2
3,399,566	-		Psyr_2825	0.50	-0.4
3,399,569	-		Psyr_2825	0.50	-0.9
3,399,569	-		Psyr_2825	0.50	-1.0
3,399,569	-		Psyr_2825	0.50	-0.4
3,399,569	-		Psyr_2825	0.50	+2.8
3,399,569	-		Psyr_2825	0.50	-0.8
3,399,675	+		Psyr_2825	0.60	+0.1
3,399,675	+		Psyr_2825	0.60	-0.9
3,399,675	+		Psyr_2825	0.60	-0.1
3,399,676	-		Psyr_2825	0.60	+2.1
3,399,676	-		Psyr_2825	0.60	+1.4
3,399,702	+		Psyr_2825	0.62	-0.4
3,400,030	+				-1.8
3,400,207	+		Psyr_2826	0.11	-0.6
3,400,208	-		Psyr_2826	0.12	-0.7
3,400,208	-		Psyr_2826	0.12	+0.2
3,400,211	+		Psyr_2826	0.12	-2.0
3,400,211	+		Psyr_2826	0.12	-1.6
3,400,272	-		Psyr_2826	0.21	-0.8
3,400,374	+		Psyr_2826	0.37	-1.6
3,400,424	+		Psyr_2826	0.45	-1.0
3,400,480	-		Psyr_2826	0.54	-0.8
3,400,480	-		Psyr_2826	0.54	-0.3
3,400,480	-		Psyr_2826	0.54	-0.9
3,400,484	+		Psyr_2826	0.54	-0.1
3,400,484	+		Psyr_2826	0.54	-1.0
3,400,493	-		Psyr_2826	0.56	-0.6
3,400,804	-				+0.2
3,400,820	+				+0.0
3,400,820	+				+0.8
3,400,820	+				+0.6
3,400,821	-				+0.2
3,400,821	-				+0.1
3,400,929	+				-0.4
3,400,929	+				-1.0
3,400,929	+				-0.2
3,400,929	+				-0.7
3,400,929	+				+0.1
3,400,929	+				+0.6
3,400,929	+				-0.2
3,400,930	-				+0.4
3,400,930	-				-1.0
3,400,930	-				-0.4
3,400,930	-				-0.1
3,400,930	-				+2.1
3,400,930	-				-1.0
3,400,930	-				+0.5
3,401,063	+		Psyr_2827	0.23	+0.6
3,401,064	-		Psyr_2827	0.23	+0.4
3,401,064	-		Psyr_2827	0.23	+0.8
3,401,113	-		Psyr_2827	0.29	+0.7
3,401,169	+		Psyr_2827	0.35	+0.6
3,401,169	+		Psyr_2827	0.35	-0.0
3,401,170	-		Psyr_2827	0.35	+1.8
3,401,232	+		Psyr_2827	0.43	-1.1
3,401,232	+		Psyr_2827	0.43	-0.4
3,401,233	-		Psyr_2827	0.43	-1.0
3,401,233	-		Psyr_2827	0.43	-0.1
3,401,446	+		Psyr_2827	0.68	-1.6
3,401,518	-		Psyr_2827	0.76	+3.6
3,401,518	-		Psyr_2827	0.76	-0.4
3,401,518	-		Psyr_2827	0.76	+3.6
3,401,637	+		Psyr_2827	0.90	-0.6
3,401,637	+		Psyr_2827	0.90	+0.7
3,401,638	-				-0.6
3,401,767	+				+1.0
3,401,767	+				+0.0
3,401,767	+				-0.5
3,401,767	+				+0.6
3,401,767	+				+2.9
3,401,767	+				-0.2
3,401,767	+				-0.7
3,401,767	+				+0.3
3,401,767	+				-0.7
3,401,767	+				+1.4
3,401,768	-				-1.0
3,401,768	-				+1.1
3,401,768	-				+0.9
3,401,768	-				-0.3
3,401,768	-				+0.6
3,401,768	-				+0.2
3,401,768	-				-0.1
3,401,768	-				-0.4
3,401,768	-				+0.6
3,401,768	-				+0.6
3,401,768	-				-0.8