Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2387

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,765,905	+				+0.5
2,766,098	+				-0.7
2,766,157	+				+2.7
2,766,157	+				+1.8
2,766,158	-				-2.9
2,766,158	-				-0.1
2,766,180	+				-0.3
2,766,180	+				-0.5
2,766,180	+				+0.2
2,766,181	-				-1.8
2,766,213	-				-1.5
2,766,218	+				+0.2
2,766,219	-				+0.5
2,766,226	+				+1.3
2,766,533	+		Psyr_2386	0.82	+1.8
2,766,533	+		Psyr_2386	0.82	+1.7
2,766,534	-		Psyr_2386	0.83	-1.1
2,766,534	-		Psyr_2386	0.83	+0.5
2,766,562	+				-0.8
2,766,563	-				+1.7
2,766,733	-				+0.3
2,766,800	-				+0.6
2,766,800	-				+0.3
2,766,852	+				+0.5
2,766,853	-				-0.9
2,766,853	-				-0.2
2,766,853	-				-0.2
2,766,853	-				+0.2
2,766,907	+		Psyr_2387	0.11	-0.4
2,766,907	+		Psyr_2387	0.11	+1.0
2,766,951	-		Psyr_2387	0.13	+1.8
2,767,173	+				+1.9
2,767,174	-		Psyr_2387	0.27	-0.1
2,767,283	-		Psyr_2387	0.33	-0.0
2,767,283	-		Psyr_2387	0.33	-0.2
2,767,314	+		Psyr_2387	0.35	+0.1
2,767,314	+		Psyr_2387	0.35	+1.4
2,767,642	-		Psyr_2387	0.55	-0.6
2,767,642	-		Psyr_2387	0.55	+1.5
2,767,872	+		Psyr_2387	0.69	+1.1
2,768,112	+		Psyr_2387	0.83	-0.6
2,768,113	-		Psyr_2387	0.83	+1.4
2,768,113	-		Psyr_2387	0.83	+0.4
2,768,283	-				+0.7
2,768,283	-				+1.1
2,768,283	-				+0.4
2,768,369	-				+0.3
2,768,486	+				-1.5
2,768,486	+				-0.1
2,768,486	+				+1.7
2,768,486	+				-0.7
2,768,486	+				-1.1
2,768,486	+				+0.0
2,768,486	+				-0.8
2,768,486	+				-0.1
2,768,486	+				+0.4
2,768,486	+				+2.9
2,768,486	+				-1.0
2,768,487	-				-0.9
2,768,487	-				+1.1
2,768,487	-				+0.4
2,768,487	-				+0.3
2,768,487	-				-0.4
2,768,487	-				-1.8
2,768,497	+				-1.1
2,768,498	-				-1.0
2,768,498	-				-1.3
2,768,499	+				+0.2
2,768,499	+				+0.4
2,768,499	+				-1.2
2,768,499	+				+0.5
2,768,500	-				-0.3
2,768,500	-				-0.2
2,768,500	-				-0.2
2,768,500	-				+2.8
2,768,500	-				-0.5
2,768,500	-				+0.8
2,768,503	-				+0.5
2,768,522	+				-1.2
2,768,523	-				-0.2
2,768,714	+				+0.7
2,768,720	+				-0.9
2,768,721	-				+0.7
2,768,771	+				-0.7
2,768,854	+				-0.2
2,768,976	+				+0.5
2,769,023	+				+0.5
2,769,032	+				-0.1
2,769,032	+				-0.0
2,769,033	-				+0.1
2,769,033	-				+3.0
2,769,033	-				+0.2
2,769,035	-				-1.5
2,769,035	-				+0.4
2,769,097	+				-0.0
2,769,098	-				-0.2
2,769,114	+				-1.6
2,769,115	-				+0.3
2,769,124	+				-1.1
2,769,153	-				+1.4
2,769,165	+				+1.0
2,769,233	-				-0.2
2,769,233	-				+0.3
2,769,247	+				+0.9
2,769,248	-				+1.1
2,769,378	+		Psyr_2388	0.17	-0.2
2,769,379	-		Psyr_2388	0.17	-1.9