Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2373

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,750,970	-		Psyr_2372	0.40	+1.1
2,751,122	+		Psyr_2372	0.50	-0.4
2,751,122	+		Psyr_2372	0.50	+0.4
2,751,122	+		Psyr_2372	0.50	-0.3
2,751,123	-		Psyr_2372	0.50	-0.5
2,751,123	-		Psyr_2372	0.50	+0.1
2,751,123	-		Psyr_2372	0.50	-1.3
2,751,123	-		Psyr_2372	0.50	-0.6
2,751,692	+		Psyr_2372	0.87	+0.3
2,751,923	+				+0.8
2,751,923	+				-1.1
2,751,923	+				+2.5
2,751,923	+				+0.4
2,751,923	+				+1.4
2,751,923	+				-1.3
2,751,923	+				+0.9
2,751,924	-				-0.2
2,751,924	-				-0.2
2,751,924	-				-0.6
2,751,924	-				-0.3
2,751,924	-				-0.6
2,751,924	-				+0.6
2,752,099	+		Psyr_2373	0.20	+0.9
2,752,099	+		Psyr_2373	0.20	-0.3
2,752,100	-		Psyr_2373	0.20	+0.5
2,752,100	-		Psyr_2373	0.20	-1.2
2,752,100	-		Psyr_2373	0.20	-0.4
2,752,100	-		Psyr_2373	0.20	-0.1
2,752,100	-		Psyr_2373	0.20	+0.3
2,752,100	-		Psyr_2373	0.20	+0.9
2,752,222	+		Psyr_2373	0.33	-0.4
2,752,223	-		Psyr_2373	0.33	-1.6
2,752,223	-		Psyr_2373	0.33	+0.1
2,752,357	-		Psyr_2373	0.46	-0.4
2,752,429	-		Psyr_2373	0.53	-0.1
2,752,429	-		Psyr_2373	0.53	-0.6
2,752,429	-		Psyr_2373	0.53	+1.6
2,752,471	+		Psyr_2373	0.58	-1.4
2,752,471	+		Psyr_2373	0.58	-0.7
2,752,494	+		Psyr_2373	0.60	-0.1
2,752,494	+		Psyr_2373	0.60	+0.4
2,752,494	+		Psyr_2373	0.60	-0.9
2,752,494	+		Psyr_2373	0.60	-2.0
2,752,494	+		Psyr_2373	0.60	+0.5
2,752,494	+		Psyr_2373	0.60	+0.9
2,752,495	-		Psyr_2373	0.60	-0.4
2,752,495	-				-0.5
2,752,495	-		Psyr_2373	0.60	+0.1
2,752,495	-		Psyr_2373	0.60	+0.5
2,752,503	+		Psyr_2373	0.61	-0.7
2,752,504	-		Psyr_2373	0.61	+0.6
2,752,504	-		Psyr_2373	0.61	-1.5
2,752,504	-		Psyr_2373	0.61	-0.1
2,752,627	+		Psyr_2373	0.73	-0.2
2,752,706	-		Psyr_2373	0.81	-1.9
2,752,706	-		Psyr_2373	0.81	-1.3
2,752,821	+				-0.1
2,752,827	+				+0.9
2,752,827	+				-0.1
2,752,827	+				-2.6
2,752,827	+				-1.3
2,752,828	-				-0.4
2,752,905	-				-0.8
2,752,919	+				-0.1
2,752,919	+				+0.8
2,752,919	+				+0.6
2,752,919	+				+0.3
2,752,919	+				+1.7
2,752,919	+				+1.3
2,752,920	-				+0.5
2,752,920	-				-0.1
2,752,920	-				-1.2
2,752,920	-				-0.7
2,752,920	-				+1.0
2,752,920	-				+3.0
2,752,920	-				+0.1
2,752,923	+				+0.4
2,752,924	-				-0.9
2,752,924	-				-0.4
2,752,924	-				+0.7
2,752,924	-				-1.1
2,752,924	-				+1.5
2,753,040	+				+0.9
2,753,041	-				-0.2
2,753,041	-				+0.4
2,753,041	-				-0.2
2,753,041	-				+0.5
2,753,111	+		Psyr_2374	0.12	+0.6
2,753,204	+		Psyr_2374	0.20	+0.0
2,753,204	+		Psyr_2374	0.20	-0.3
2,753,204	+		Psyr_2374	0.20	+0.0
2,753,205	-		Psyr_2374	0.20	+0.5
2,753,212	-		Psyr_2374	0.20	-0.8
2,753,212	-		Psyr_2374	0.20	+1.4
2,753,212	-		Psyr_2374	0.20	-1.6
2,753,251	+		Psyr_2374	0.23	-0.2
2,753,251	+		Psyr_2374	0.23	-1.1
2,753,252	-		Psyr_2374	0.23	-0.2
2,753,252	-		Psyr_2374	0.23	-0.6
2,753,252	-		Psyr_2374	0.23	+0.7
2,753,417	+		Psyr_2374	0.36	-0.2
2,753,417	+		Psyr_2374	0.36	-0.2
2,753,418	-		Psyr_2374	0.36	-1.0
2,753,666	+		Psyr_2374	0.55	+1.5
2,753,666	+		Psyr_2374	0.55	+0.5
2,753,756	+		Psyr_2374	0.62	-1.3
2,753,757	-		Psyr_2374	0.62	+0.4
2,753,757	-		Psyr_2374	0.62	+1.0