Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2301

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,673,479	+				+0.4
2,673,537	+				-2.3
2,673,670	+		Psyr_2300	0.23	+1.5
2,673,674	+		Psyr_2300	0.24	+0.8
2,673,674	+		Psyr_2300	0.24	-1.3
2,673,678	+		Psyr_2300	0.24	+1.2
2,673,678	+		Psyr_2300	0.24	+1.3
2,673,849	-		Psyr_2300	0.42	+0.2
2,674,150	+		Psyr_2300	0.73	+1.5
2,674,150	+		Psyr_2300	0.73	+0.2
2,674,201	+		Psyr_2300	0.78	+1.2
2,674,201	+		Psyr_2300	0.78	-0.5
2,674,337	-				+0.7
2,674,622	+		Psyr_2301	0.29	+0.1
2,674,623	-		Psyr_2301	0.29	-1.2
2,674,623	-		Psyr_2301	0.29	-1.5
2,674,623	-		Psyr_2301	0.29	-0.1
2,674,623	-		Psyr_2301	0.29	-0.6
2,674,629	-		Psyr_2301	0.30	-1.2
2,674,704	+		Psyr_2301	0.40	+0.7
2,674,705	-		Psyr_2301	0.40	-0.4
2,674,983	+		Psyr_2301	0.77	-1.6
2,674,983	+		Psyr_2301	0.77	-0.3
2,674,984	-		Psyr_2301	0.78	-0.5
2,674,984	-		Psyr_2301	0.78	+0.3
2,674,984	-		Psyr_2301	0.78	-0.5
2,674,991	+		Psyr_2301	0.79	-0.8
2,674,991	+		Psyr_2301	0.79	+1.0
2,674,991	+		Psyr_2301	0.79	+1.3
2,674,992	-		Psyr_2301	0.79	-0.1
2,674,992	-		Psyr_2301	0.79	+0.4
2,674,992	-		Psyr_2301	0.79	-1.0
2,674,992	-		Psyr_2301	0.79	-1.6
2,675,123	-				-0.5
2,675,123	-				-0.5
2,675,580	-		Psyr_2302	0.33	+2.1
2,675,765	+		Psyr_2302	0.47	+1.5
2,675,765	+		Psyr_2302	0.47	+1.0
2,675,822	+		Psyr_2302	0.51	+0.6
2,675,822	+		Psyr_2302	0.51	-0.2
2,675,822	+		Psyr_2302	0.51	-0.4
2,675,856	+		Psyr_2302	0.54	-1.5
2,675,892	+		Psyr_2302	0.57	-0.5
2,675,892	+		Psyr_2302	0.57	+2.8
2,675,892	+		Psyr_2302	0.57	-0.5
2,676,100	+		Psyr_2302	0.72	+1.1
2,676,100	+		Psyr_2302	0.72	-0.1
2,676,100	+		Psyr_2302	0.72	-0.5
2,676,100	+		Psyr_2302	0.72	+1.0
2,676,100	+		Psyr_2302	0.72	+0.9
2,676,100	+		Psyr_2302	0.72	-0.6
2,676,100	+		Psyr_2302	0.72	+0.4
2,676,100	+		Psyr_2302	0.72	-0.2
2,676,100	+		Psyr_2302	0.72	+0.5
2,676,101	-		Psyr_2302	0.73	-0.7
2,676,135	-		Psyr_2302	0.75	-0.8
2,676,135	-		Psyr_2302	0.75	+0.3
2,676,135	-		Psyr_2302	0.75	+0.6
2,676,135	-		Psyr_2302	0.75	+0.1