Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2271

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,635,773	-		Psyr_2269	0.75	+1.0
2,635,861	+		Psyr_2269	0.85	+0.1
2,635,861	+		Psyr_2269	0.85	-0.7
2,635,861	+		Psyr_2269	0.85	+1.3
2,635,861	+		Psyr_2269	0.85	+0.2
2,635,984	+				-0.2
2,635,984	+				-0.5
2,635,985	-				+0.1
2,635,985	-				+1.2
2,636,059	-				+0.5
2,636,059	-				+0.1
2,636,067	-		Psyr_2270	0.11	-1.3
2,636,418	+		Psyr_2270	0.73	-0.8
2,636,418	+		Psyr_2270	0.73	-1.5
2,636,418	+		Psyr_2270	0.73	+0.1
2,636,418	+		Psyr_2270	0.73	-0.5
2,636,419	-		Psyr_2270	0.73	-0.8
2,636,419	-		Psyr_2270	0.73	+0.1
2,636,419	-		Psyr_2270	0.73	-0.2
2,636,419	-		Psyr_2270	0.73	-1.2
2,636,419	-		Psyr_2270	0.73	+0.0
2,636,419	-		Psyr_2270	0.73	+0.9
2,636,598	+				-0.5
2,636,600	+				+0.2
2,636,600	+				+0.5
2,636,600	+				-1.2
2,636,601	-				-0.5
2,636,601	-				-0.1
2,636,601	-				-0.7
2,636,613	-				+0.2
2,636,668	+				+2.1
2,636,669	-				-0.5
2,636,669	-				-0.6
2,636,782	+				-1.4
2,636,782	+				+0.3
2,636,963	+		Psyr_2271	0.22	-0.5
2,636,964	-		Psyr_2271	0.22	-1.3
2,637,080	+		Psyr_2271	0.32	-0.2
2,637,080	+		Psyr_2271	0.32	-1.2
2,637,080	+		Psyr_2271	0.32	-0.6
2,637,080	+		Psyr_2271	0.32	+1.3
2,637,081	-		Psyr_2271	0.32	-0.9
2,637,081	-		Psyr_2271	0.32	-0.6
2,637,298	+		Psyr_2271	0.51	+0.1
2,637,299	-		Psyr_2271	0.51	-1.2
2,637,636	+		Psyr_2271	0.80	-0.4
2,637,637	-		Psyr_2271	0.80	-0.3
2,637,637	-		Psyr_2271	0.80	-0.5
2,637,639	+		Psyr_2271	0.80	+0.3
2,637,680	+		Psyr_2271	0.83	+0.2
2,637,680	+		Psyr_2271	0.83	-0.9
2,637,680	+		Psyr_2271	0.83	-3.0
2,637,680	+		Psyr_2271	0.83	-1.6
2,637,681	-		Psyr_2271	0.83	-0.3
2,637,681	-		Psyr_2271	0.83	-0.5
2,637,681	-		Psyr_2271	0.83	-0.5
2,637,681	-		Psyr_2271	0.83	-1.0
2,637,741	-		Psyr_2271	0.89	+2.1
2,637,786	+				+1.3
2,637,866	+				-0.7
2,637,866	+				+2.0
2,637,873	-				-1.1
2,638,158	+		Psyr_2272	0.39	+0.1
2,638,158	+		Psyr_2272	0.39	+0.1
2,638,158	+		Psyr_2272	0.39	+1.9
2,638,158	+		Psyr_2272	0.39	-0.9
2,638,158	+		Psyr_2272	0.39	+0.8
2,638,159	-		Psyr_2272	0.39	+0.3
2,638,159	-		Psyr_2272	0.39	+0.7
2,638,159	-		Psyr_2272	0.39	-0.7
2,638,159	-		Psyr_2272	0.39	-0.1
2,638,207	-		Psyr_2272	0.47	+0.5
2,638,294	-		Psyr_2272	0.61	-0.5
2,638,483	-				-0.3
2,638,483	-				-0.3
2,638,617	-				+1.3
2,638,646	+				-0.5
2,638,647	-				-0.1
2,638,647	-				+0.0
2,638,647	-				+0.4
2,638,692	-				+1.9
2,638,749	-				+0.1
2,638,865	+				+0.4
2,638,865	+				-0.3
2,638,865	+				-0.6
2,638,865	+				+0.0
2,638,865	+				+2.3
2,638,865	+				+0.7
2,638,866	-				+2.9
2,638,869	+				+0.5
2,638,870	-				-1.8