Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2160

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,513,635	+				+1.5
2,513,635	+				+0.7
2,513,635	+				+1.1
2,513,635	+				-0.8
2,513,636	-				+2.5
2,513,636	-				+1.8
2,513,636	-				+0.2
2,513,639	+				-0.8
2,513,639	+				+0.1
2,513,640	-				-0.2
2,513,640	-				+0.9
2,513,640	-				-3.1
2,513,640	-				-2.1
2,513,686	-		Psyr_2158	0.13	-0.3
2,513,924	-				-0.2
2,513,957	+				-0.3
2,513,957	+				+2.3
2,513,958	-				-0.6
2,513,958	-				-0.8
2,513,958	-				-1.5
2,513,958	-				+1.5
2,513,961	+				+0.1
2,513,961	+				+2.1
2,513,961	+				+1.7
2,513,962	-				+0.1
2,513,962	-				-0.7
2,513,962	-				+0.3
2,514,163	+				+0.5
2,514,163	+				-1.0
2,514,164	-				-0.5
2,514,164	-				+0.6
2,514,193	+				+1.0
2,514,242	-		Psyr_2159	0.23	-0.2
2,514,616	+		Psyr_2160	0.21	-0.4
2,514,616	+		Psyr_2160	0.21	-0.5
2,514,689	+		Psyr_2160	0.55	-0.6
2,514,725	-		Psyr_2160	0.72	-0.5
2,514,759	-		Psyr_2160	0.88	+1.5
2,514,759	-		Psyr_2160	0.88	-0.9
2,514,789	+				-1.1
2,514,789	+				-2.5
2,514,790	-				-1.1
2,514,790	-				-0.2
2,514,790	-				-0.5
2,514,790	-				-2.3
2,514,849	-				+1.0
2,514,853	+				-1.3
2,514,854	-				-0.4
2,514,878	+				-0.2
2,514,878	+				+0.4
2,514,879	-				+1.3
2,514,879	-				+0.5
2,514,881	+				+1.1
2,514,910	+				-0.5
2,514,910	+				-1.1
2,514,910	+				-0.2
2,514,911	-				-1.1
2,514,911	-				+1.6
2,514,911	-				+3.1
2,514,912	+				-0.9
2,514,913	-				+0.5
2,514,913	-				-0.2
2,514,913	-				+0.3
2,514,927	-				-0.7
2,515,173	+		Psyr_2161	0.30	+1.2
2,515,174	-		Psyr_2161	0.31	-2.1
2,515,397	+				-0.7
2,515,520	+				-0.2
2,515,594	+				+0.6
2,515,719	+				-2.1